Locus 4516

Sequence ID 3L_DroMel_CAF1
Location 13,010,763 – 13,010,857
Length 94
Max. P 0.701969
window7056

overview

Window 6

Location 13,010,763 – 13,010,857
Length 94
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 82.17
Mean single sequence MFE -24.52
Consensus MFE -19.26
Energy contribution -19.57
Covariance contribution 0.31
Combinations/Pair 1.21
Mean z-score -1.60
Structure conservation index 0.79
SVM decision value 0.35
SVM RNA-class probability 0.701969
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13010763 94 - 23771897
CA----GCACUUUACUAUCGCAAAAUAAAAAAUUAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGG-ACC
..----((...........))..............((((((((.....(((((((((((....)))).))))..))).....))))))))------------------.....-... ( -25.20)
>DroSec_CAF1 1778 95 - 1
AA----GCACUUUACUAUCGCAAAAUAAAAAAUUAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGGCACC
..----((...((((.........((((....))))..(((((.....(((((((((((....)))).))))..))).....))))))))------------------)...))... ( -25.70)
>DroSim_CAF1 1792 95 - 1
CA----GCACUUUACUAUCGCAAAAUAAAAAAUUAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGGCACC
..----((...((((.........((((....))))..(((((.....(((((((((((....)))).))))..))).....))))))))------------------)...))... ( -25.70)
>DroEre_CAF1 4136 94 - 1
CA----GCACUUUACGUUCGCAAAAUAAAAAA-UAUAUUCGUGAAAACGGUCUGCGCCAGUGGUGGCAGCAGCGGCUCAAAACACGAGUA------------------AUCGGCACG
..----((.........((((...........-.....((((....))))..(((((((....)))).))))))).........(((...------------------.)))))... ( -22.40)
>DroYak_CAF1 1795 94 - 1
CA----GCACUUUACCUUCGCAAAAUAAAAAA-UAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA------------------AUCGGCACG
..----((...........))...........-..((((((((.....(((((((((((....)))).))))..))).....))))))))------------------......... ( -25.20)
>DroPer_CAF1 7889 113 - 1
CGGCUUGUAUUUUUUCUUCGCGAAAAAAAAAA-UAUAUGCGUGAAAACGGUCUGCACCAGUGGUGGCAGAGGCAGAACAAACCACGGAUGCUAUAUACAUAUCAAUUAAUCG---CG
..((.((((((((((.((.....)).))))))-)))).))((((......((((((((...))).)))))((((...(.......)..)))).................)))---). ( -22.90)
>consensus
CA____GCACUUUACUAUCGCAAAAUAAAAAA_UAUAUUCGUGAAAACGGUCUGCGCCAGUGAUGGCAGCAGCGGCCCAAAACACGAGUA__________________AUCGGCACC
...................................((((((((.....(((((((((((....)))).))))..))).....))))))))........................... (-19.26 = -19.57 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:30 2006