Locus 4513

Sequence ID 3L_DroMel_CAF1
Location 13,008,187 – 13,008,307
Length 120
Max. P 0.792523
window7050

overview

Window 0

Location 13,008,187 – 13,008,307
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.87
Mean single sequence MFE -33.00
Consensus MFE -28.08
Energy contribution -28.20
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.98
Structure conservation index 0.85
SVM decision value 0.59
SVM RNA-class probability 0.792523
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13008187 120 + 23771897
UUUUCGUCUCUGUUUUUACUUUCACGUGCGCCGUGCCCCCCCCCCCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA
...................((((((((((.(((((((((........((.....))..((((((((((...........))))))))))...)))))...)))).....)))))))))). ( -35.30)
>DroSec_CAF1 15151 114 + 1
UUUUCGUCUCUGUUUUUACUUUCACGUGCGCCGUGCCC------CCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA
...................((((((((((.((((((((------(..((.....))..((((((((((...........))))))))))...)))))...)))).....)))))))))). ( -35.30)
>DroSim_CAF1 17703 114 + 1
UUUUCGUCUCUGUUUUUACUUUCACGAGCGCCGUGCCC------CCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA
...................(((((((.((.((((((((------(..((.....))..((((((((((...........))))))))))...)))))...)))).....)).))))))). ( -30.70)
>DroYak_CAF1 16949 113 + 1
UUUUCGUCUGUGUUUUUACUUUCACGUGUGCUGU-CCC------CCCGCAAGAUGAUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA
...................((((((((((..((.-...------(((((.((.(((..((((((((((...........)))))))))).)))...))..))))).)).)))))))))). ( -30.70)
>consensus
UUUUCGUCUCUGUUUUUACUUUCACGUGCGCCGUGCCC______CCCGCAAGAUGCUUAUUUAUGAGCUUAAUUAAUUUGUUUAUGGAUUUCGGGGCUAAGCGGGUCAAGCAUGUGAAAA
...................((((((((((.((((((((........(....)......((((((((((...........))))))))))....))))...)))).....)))))))))). (-28.08 = -28.20 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006