| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,004,296 – 13,004,412 |
| Length | 116 |
| Max. P | 0.521188 |
| Location | 13,004,296 – 13,004,412 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.90 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -13.80 |
| Energy contribution | -14.80 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13004296 116 + 23771897 AAGUUGUUCAUUUUUACUGAAUGAAAACGAUUUUCCCGUUACUUGUUCAUUUAACAUAUGAUUAUUAU----GAUUCAUUCUGCCAGUGAAUGCUUAAAAUGAACAUCGAUUGUCAGGUU ..(((.(((((((.....))))))))))(((..((........(((((((((..((((.......)))----)(((((((.....))))))).....)))))))))..))..)))..... ( -21.30) >DroSec_CAF1 11326 115 + 1 -UGCUGUUCACUUUUACUGAAUGAACACGAUUUUCCCGUUACUUGUUCAUUUAACAUAUGAUUAUUAU----GAUUCAUUCUAACAGUGAAUGCUUCAAAUGAACACUGAUCGUUAGGUU -...((((((.......((((((((((((.......))).....)))))))))..............(----((..(((((.......)))))..)))..))))))..((((....)))) ( -20.90) >DroSim_CAF1 13865 116 + 1 AUGCUGUUCAUUUUUACUGAAUGAACACGAUUUUCCCGUUACUUGUUCAUUUAACAUAUGAUUAUUAU----GAUUCAUUCUACCAAUGAAUGCUUAAAAUGAACACUGAUUGUUAGGUU ....(((((((((.....))))))))).(((((..(.((((..(((((((((..((((.......)))----)(((((((.....))))))).....))))))))).)))).)..))))) ( -24.20) >DroEre_CAF1 11279 111 + 1 ACGAUGUACAUUUCUACUUAAUGAACAUGAAUGCCCCGUUACGUGUUCAUUUAACAUAUGAUUAUGAUAAGUGAUUCAUUCUGCCAGUGAACGCUUAAAAUAAACGCUUAU--------- .((.....(((........((((((((((((((...)))).))))))))))......))).((((..((((((.((((((.....))))))))))))..)))).)).....--------- ( -23.04) >DroYak_CAF1 11766 110 + 1 GCUUUGUACAUUU-UACUUAAUGAACAUGAAUUCCCCGUUACGUGUUCAUUUAACAUAUGUUUACGAUAACUGGUUCAUUCUGCCAGUGAACGCUCAAAAUAAACACUGCU--------- ((..(((((((..-.....(((((((((((((.....))).))))))))))......))))...((...((((((.......))))))...))..........)))..)).--------- ( -24.52) >consensus ACGCUGUUCAUUUUUACUGAAUGAACACGAUUUUCCCGUUACUUGUUCAUUUAACAUAUGAUUAUUAU____GAUUCAUUCUGCCAGUGAAUGCUUAAAAUGAACACUGAU_GU_AGGUU ....(((((((((....((((((((((((.......))).....)))))))))....................(((((((.....))))))).....))))))))).............. (-13.80 = -14.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:22 2006