| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,996,616 – 12,996,706 |
| Length | 90 |
| Max. P | 0.776201 |
| Location | 12,996,616 – 12,996,706 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 84.52 |
| Mean single sequence MFE | -30.95 |
| Consensus MFE | -21.08 |
| Energy contribution | -20.95 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12996616 90 + 23771897 UCGGUAUUGUUUAUCUCAGUGUUACCAGGUGCCGCAGGUGACGCAUCUGUGGCUAAUGCGUGGUAACUCGCAAAACGG---UAACUCUGUGCA ..((((.....)))).(((.((((((....((((((((((...))))))))))...((((.(....).))))....))---)))).))).... ( -34.60) >DroSec_CAF1 3473 90 + 1 UCGGUAUUGUUUAUCUCAGUGUUACCAGGUGUCGCGGGUCACGCAUCUGUGGCUAAUGCGUGGUAACUCGCGAGACGG---UAACUCUGUGCA ..((((.....)))).(((.((((((..((.(((((((((((((((.........)))))))...)))))))).))))---)))).))).... ( -35.90) >DroSim_CAF1 3491 89 + 1 UCGGUAUUGUUUAUCU-AGUGUUACCAGGUGUCGCGGGUCACGCAUCUGUGGCUAAUGCGUGGUAACUCGCAAAACAG---CAACUCUGUGCA .(((..(((((.....-.(.(((((((.(((((((((((.....)))))))))....)).))))))).).......))---)))..))).... ( -27.02) >DroEre_CAF1 3560 92 + 1 UCGGGAUUGUUUAUCUCGGUGUUACCAGGUGCCUCGGGUCAAUUAUGUGUGACUAACGCGUGGCGACUCUC-AAGCAGGGAUAUUUUUGUGCA .((((((.....))))))(.((..(((.(((.....(((((........)))))..))).)))..)).)..-..(((.(((....))).))). ( -26.30) >consensus UCGGUAUUGUUUAUCUCAGUGUUACCAGGUGCCGCGGGUCACGCAUCUGUGGCUAAUGCGUGGUAACUCGCAAAACAG___UAACUCUGUGCA ......((((((......(.(((((((.(((((((((((.....)))))))))....)).))))))).)...))))))............... (-21.08 = -20.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:09 2006