Locus 45

Sequence ID 3L_DroMel_CAF1
Location 173,994 – 174,154
Length 160
Max. P 0.916958
window56 window57

overview

Window 6

Location 173,994 – 174,114
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -47.30
Consensus MFE -43.21
Energy contribution -43.10
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.91
SVM decision value 0.74
SVM RNA-class probability 0.838028
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 173994 120 - 23771897
CAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCCGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCAGUUCCAGUCGGCACUGCGAGCAACUGGCACUGGAACCUCG
(((((.....)))))(((.(((((..((((.(((((((.((........)).))).))))..))))..)))))....(((((.(((((..((.......)).))))).))))).)))... ( -43.60)
>DroSec_CAF1 7700 120 - 1
CAGAAUAAUCUUCUGGGUGCGUUUGACUCUGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCAGUUCCAGUCGGCACUGCGAGCAACUGGAACUGGAACCUCG
(((((.....)))))((((((((((.((((.((((((((((........)))))).)))).....))))..)))))))((((((((((..((.......)).))))))))))..)))... ( -51.30)
>DroYak_CAF1 7909 120 - 1
CAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGGACCGCUGAUCAGACGCUCAGCGAGUUCAACGAGGAGGACGAACGUCAGUUCCAGUCGGCACUGCGAGCUACUGGCACUGGGACCUCG
(((((.....)))))(((.(((((..((((.((((((((((.(....).)))))).))))..))))..)))))....(((((.(((((.(((.......)))))))).))))).)))... ( -47.00)
>consensus
CAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCAGUUCCAGUCGGCACUGCGAGCAACUGGCACUGGAACCUCG
(((((.....)))))(((.(((((..(((..((((((((((........)))))).))))...)))..)))))....(((((.(((((..((.......)).))))).))))).)))... (-43.21 = -43.10 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 174,034 – 174,154
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -44.60
Consensus MFE -39.74
Energy contribution -39.63
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -2.66
Structure conservation index 0.89
SVM decision value 1.11
SVM RNA-class probability 0.916958
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 174034 120 - 23771897
AUUUGAGGCACCGCACAGUACAGCAUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCCGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCA
......(((...((((......((.((....)).))...((((((.....))))))))))((((..((((.(((((((.((........)).))).))))..))))..))))....))). ( -41.50)
>DroSec_CAF1 7740 120 - 1
AUUUGAGGCACCGCACAGUACAGCAUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCUGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCA
......(((...((((......((.((....)).))...((((((.....))))))))))(((((.((((.((((((((((........)))))).)))).....))))..)))))))). ( -44.90)
>DroYak_CAF1 7949 120 - 1
AUUCGAGGCACCCCACAGUACAGCCUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGGACCGCUGAUCAGACGCUCAGCGAGUUCAACGAGGAGGACGAACGUCA
......(((........((((.(((((....)))))...((((((.....))))))))))((((..((((.((((((((((.(....).)))))).))))..))))..))))....))). ( -47.40)
>consensus
AUUUGAGGCACCGCACAGUACAGCAUCUCAAGAGGCCUACCAGAAUAAUCUUCUGGGUGCGUUUGACUCGGGAACCGCUGAUCAGACACUCAGCGAGUUCAACGAGGAGGACGAACGCCA
......(((........((((.((.((....)).))...((((((.....))))))))))((((..(((..((((((((((........)))))).))))...)))..))))....))). (-39.74 = -39.63 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:46 2006