Locus 4498

Sequence ID 3L_DroMel_CAF1
Location 12,987,592 – 12,987,709
Length 117
Max. P 0.913666
window7025

overview

Window 5

Location 12,987,592 – 12,987,709
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.46
Mean single sequence MFE -34.52
Consensus MFE -28.16
Energy contribution -27.76
Covariance contribution -0.40
Combinations/Pair 1.17
Mean z-score -1.81
Structure conservation index 0.82
SVM decision value 1.09
SVM RNA-class probability 0.913666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12987592 117 + 23771897
UGCUUUGUUGGGCUGGAAUGGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUGGCACCUUUAGAUGAGUCA---UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU
.((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((....(((((((((((....---))))))..)))))......)))))..).)))).. ( -35.60)
>DroSec_CAF1 104912 117 + 1
UGCUUUGUUGGGCUGGAAUGGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUUGCACCUUUAGAUGAGUCA---UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU
.((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((((..(((((((((((....---))))))..)))))....)))))))..).)))).. ( -36.60)
>DroSim_CAF1 114546 117 + 1
UGCUUUGUUGGGCUGGAAUUGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUUGCACCUUUAGAUGAGUCA---UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU
.((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((((..(((((((((((....---))))))..)))))....)))))))..).)))).. ( -36.60)
>DroEre_CAF1 110927 117 + 1
UGCUUUGUUGGGCUGGAAUGGAUUUUAGAAGCUCCACUUCAUCGUCGGAGCUGUCGAAUGGAUUUGCACCUUUGGAAGAUUCA---UCAUCUUUAAAAGGAUUUAAGUCCUCUGGAUAGU
.((((((.(((..((((.((((..........)))).))))))).))))))((((.(..(((((((..(((((.((((((...---..)))))).)))))...)))))))..).)))).. ( -32.30)
>DroYak_CAF1 109714 120 + 1
UACUUUGUUGGGCUGGAAUGGAUUUUAGAAGCUCAACUUCAUCGUCGGAGCUGUCAAAUGGAUUUGCACCUUUGGAUGAAUCAUCAUCAUCUUUAAAAGGAUUUAAGUCCUCUGGGUAGU
......((((((((.(((.....)))...))))))))............(((..(....(((((((..(((((((((((.......))))))...)))))...)))))))....)..))) ( -31.50)
>consensus
UGCUUUGUUGGGCUGGAAUGGCUUUAAGAAGCUCCACUUCAUCAUCAGAGCUGUCGAAUGGGUUUGCACCUUUAGAUGAGUCA___UCAUCUUUAAAGGGAUUUAGAUCCUCUGGAUAGU
.((((((.((((.((((...((((....)))))))).))))....))))))((((.(..(((((((..(((((((((((.......))))))...)))))...)))))))..).)))).. (-28.16 = -27.76 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:00 2006