Locus 4484

Sequence ID 3L_DroMel_CAF1
Location 12,973,649 – 12,973,769
Length 120
Max. P 0.991611
window6998

overview

Window 8

Location 12,973,649 – 12,973,769
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.13
Mean single sequence MFE -34.64
Consensus MFE -28.26
Energy contribution -28.02
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.45
Structure conservation index 0.82
SVM decision value 2.28
SVM RNA-class probability 0.991611
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12973649 120 - 23771897
GGGCAUACAAGUCAGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGGAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCAGGCUCCUCAUGUGUGCUUUUCAU
(((((((((.(..(((((.((..((((...................((((...(((((......)).)))...))))(((....)))))))..)).)))))...).)))))))))..... ( -35.20)
>DroSec_CAF1 91035 120 - 1
GGGCAUACAAGUCGGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGCAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCUGGCUCCUCAUGUGUGCUUUUCAU
(((((((.((((.(((....)))....)))).)))))))..((((((((....)))))))).....((((..((.((.((((.(((((........)))))..)))).)).))...)))) ( -33.30)
>DroSim_CAF1 100737 120 - 1
GGGCAUACAAGUCGGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGCAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCAGGCUCCUCAUGUGUGCUUUUCAU
(((((((((.(..(((((.((..((((.(..(..((.....((((((((....))))))))....))..)..)....(((....)))))))..)).)))))...).)))))))))..... ( -34.20)
>DroEre_CAF1 96400 113 - 1
GGGCAUACAAGUCAGGCUGAGUUAAUUACUUUUGUGUCCUCAAGUCUGGGAUUACAGAUUUAAUUCAUGAUUGUCCAGGUGAAAGCCGAUUUUCUCAGGCUUUUCAUGUG--UGU-----
..(((((((.(..((.(((((..((((((..(..((.....(((((((......)))))))....))..)..))...(((....)))))))..))))).))...).))))--)))----- ( -34.60)
>DroYak_CAF1 94958 115 - 1
GGGCAUACAAGUCAGGCUGAGUUAAUUACUUUUGUGUCCCCAAGUCUGGGAUUACAGAUUUAAUUCAUGAUUGUCCAGGUGAAAGCCGAUUUUCUCAGGCUUUUCAUGUGUGUGU-----
..(((((((.(..((((((((((((.....((((((..((((....))))..)))))).)))))))..((..(((..(((....))))))..))...)))))..).)))))))..----- ( -35.90)
>consensus
GGGCAUACAAGUCAGCCUAAGUUAAUUACUUUUGUGUCCUCAAGUCUGGGAUUUCAGAUUUAAUUCAUGAUUGCCCAGGUGAAAGCCGAUUUUCUCAGGCUCCUCAUGUGUGCUUUUCAU
(((((((.((((...............)))).)))))))..(((((((......)))))))....(((((..(((..(((....)))((.....)).)))...)))))............ (-28.26 = -28.02 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:33 2006