Locus 448

Sequence ID 3L_DroMel_CAF1
Location 1,305,796 – 1,305,902
Length 106
Max. P 0.656823
window655

overview

Window 5

Location 1,305,796 – 1,305,902
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 70.03
Mean single sequence MFE -35.88
Consensus MFE -12.18
Energy contribution -13.07
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -1.93
Structure conservation index 0.34
SVM decision value 0.26
SVM RNA-class probability 0.656823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1305796 106 - 23771897
CGUCCUUGGGGGCCACCCCCUCCGCCCGGACCACCGCCGCCAGGACCUCCUCCUCCGCCGGGACCCUACUACAAUCCCUACUACAAUGGC--UA------------CAACUACUACGGCG
.(((((.((.(((.......(((....))).....))).))))))).........((((((((...........))))........((..--..------------))........)))) ( -29.10)
>DroPse_CAF1 10051 109 - 1
CCUCCAUGGGGGCCCCC------ACCAGGACCACCACCGCCACAGCCCCCG--UACUUUGGAGG-AUAC--CCAUCCUAUCCAGGAUGGGGUGGCGGCUAUCCGGGCGGCUAUCCUGGCG
...(((.((((((((((------....((....)).(((((((..((.(((--.....))).))-...(--(((((((....)))))))))))))))......))).)))).)))))).. ( -52.00)
>DroSec_CAF1 9587 106 - 1
CGUCCUUGGGGGCCACCACCUCCGCCCGGACCACCGCCGCCAGGACCUCCUCCUCCUCCGGGGCCCUACUACAAUCCCUACUACAAUGGC--UA------------CAACUACUACGGCG
.((((.((((((......))))))...))))...(((((((((((........))))..))((((......................)))--).------------.........))))) ( -27.75)
>DroSim_CAF1 12507 106 - 1
CGUCCUUGGGGGCCACCACCUCCGCCCGGACCACCGCCGCCAGGACCUCCUCCUCCUCCGGGGCCCUACUACAAUCCCUACUACAAUGGC--UA------------CAACUACUACGGCG
.((((.((((((......))))))...))))...(((((((((((........))))..))((((......................)))--).------------.........))))) ( -27.75)
>DroEre_CAF1 9507 103 - 1
CGUCCUUGGGGCCCACCACCUCCACCCGGACCUCCUCCGCCAGGACCUCCUCC---UCCGGGCCCCUACUACAAUCCCUACUACAAUGGC--UU------------CAACUACUACGGCG
((((...(((((((............((((.....))))..((((.....)))---)..)))))))..........((.........)).--..------------..........)))) ( -26.70)
>DroPer_CAF1 10030 109 - 1
CCUCCAUGGGGGCCCCC------ACCAGGACCACCACCGCCACAGCCCCCG--UACUUUGGAGG-AUAC--CCAUCCUAUCCAGGAUGGGGUGGCGGCUAUCCGGGCGGCUAUCCUGGCG
...(((.((((((((((------....((....)).(((((((..((.(((--.....))).))-...(--(((((((....)))))))))))))))......))).)))).)))))).. ( -52.00)
>consensus
CGUCCUUGGGGGCCACCACCUCCACCCGGACCACCGCCGCCAGGACCUCCUCCUCCUCCGGGGCCCUACUACAAUCCCUACUACAAUGGC__UA____________CAACUACUACGGCG
.......((((.((.............)).)).))..(((((((.((((..........)))).))).........((.........))...........................)))) (-12.18 = -13.07 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:05 2006