Locus 4469

Sequence ID 3L_DroMel_CAF1
Location 12,961,585 – 12,961,705
Length 120
Max. P 0.827099
window6967

overview

Window 7

Location 12,961,585 – 12,961,705
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -34.72
Consensus MFE -32.06
Energy contribution -32.46
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.92
SVM decision value 0.70
SVM RNA-class probability 0.827099
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12961585 120 - 23771897
GCUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG
((((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........))))))..... ( -38.90)
>DroSec_CAF1 78835 120 - 1
ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCGAAGGCUUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG
.(((((.....((..((....((((((..(((((((((.(....((....))..).)))))))(((....)))..........)).....))))))...))...))...)))))...... ( -30.60)
>DroSim_CAF1 83550 120 - 1
ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG
.(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... ( -34.70)
>DroEre_CAF1 84856 120 - 1
ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAGCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCAAAAG
.(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... ( -34.70)
>DroYak_CAF1 82747 120 - 1
ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAGGUCUGCCACAGCAAAAG
.(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... ( -34.70)
>consensus
ACUGUGAAAUUGAAGCGAAUCCUUGAUGGACGGAUGCUGAUGCCGGUUAACCCUUGAGCAUCCAGCCAAGGCGUUAACAAGUAGUAAUUAAUCAAGCUCCGAAGUCUGCCACAGCACAAG
.(((((.............(((.....)))((((.((((((((..(((((((((((.((.....))))))).))))))..))........))).)))))))........)))))...... (-32.06 = -32.46 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:02 2006