| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,961,000 – 12,961,114 |
| Length | 114 |
| Max. P | 0.727345 |
| Location | 12,961,000 – 12,961,114 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.32 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -25.00 |
| Energy contribution | -26.64 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12961000 114 + 23771897 CAUCCAAACCUCCGCA----CCAUU--UUUACCAUAGCCUCGGGACAAGGCAAAAACUUUCGCAUCUCGCAUCUCGAUAUGUGUGUUCGCAAAUAAAAUUUGUUUAAUGCCGAGGCGCAA ................----.....--.........(((((((.(..(((((((......(((((.(((.....))).)))))((....)).......)))))))..).))))))).... ( -25.80) >DroSec_CAF1 78192 117 + 1 CAUCCAUACCUCCGCAC-CACCACU--UUUACCAUAGCCUCGGGACGAGGCAAAAACUUUCGCAACUCGCAUCUCGAUAUGUGUGUGCGCAAAUAAAAUUUGUUUAGUGCCGAGGCGCAA .................-.......--.........(((((((.((.(((((((...(((((((...(((((......)))))..)))).))).....))))))).)).))))))).... ( -32.50) >DroSim_CAF1 82946 118 + 1 CAUCCAAACCUCCGCACCCACCACU--UUUACCAUAGCCUCGGGACGAGGCAAAAACUUUCGCAUCUCGCAUCUCGAUAUGUGUGUGCGCAAAUAAAAUUUGUUUAGUGCCGAGGCGCAA .........................--.........(((((((.((.(((((((...((((((((..(((((......))))).))))).))).....))))))).)).))))))).... ( -33.00) >DroEre_CAF1 84203 105 + 1 CAUUCAAGCCUCCGCA----CCUCU--UUUACCAUUGCCUCGGGACAAGGCAAAAACUUUCGCAUCUCG---------AUGUGUGUGCGCAAAUAAAAUUUGUUUAGUGCUGAGACGCAA .......(((((.(((----(....--.......((((((.......))))))..((...(((((....---------))))).))..((((((...))))))...)))).)))..)).. ( -22.30) >DroYak_CAF1 82082 107 + 1 CAUUCAAACCUCCGCA----CCACUACUUUACCAUAGCCUCGGGACGAGGCAAAAACUUUCGCAUCUCG---------AUGUGUGUGCGCAAAUAAAAUUUGUUUAGUGCCGAGGCGCAA ........((((.(((----((((............((((((...)))))).........(((((....---------))))).))).((((((...))))))...)))).))))..... ( -28.40) >consensus CAUCCAAACCUCCGCA____CCACU__UUUACCAUAGCCUCGGGACGAGGCAAAAACUUUCGCAUCUCGCAUCUCGAUAUGUGUGUGCGCAAAUAAAAUUUGUUUAGUGCCGAGGCGCAA ....................................(((((((.((.(((((((...(((((((.(.(((((......))))).))))).))).....))))))).)).))))))).... (-25.00 = -26.64 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:01 2006