| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,960,229 – 12,960,345 |
| Length | 116 |
| Max. P | 0.940402 |
| Location | 12,960,229 – 12,960,345 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.36 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -20.46 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12960229 116 + 23771897 ----CAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ----..((((..........))))...(((((.......((((((.......)))))).........(((((...)))))....))))).......((((((.....))))))....... ( -23.90) >DroSec_CAF1 77448 116 + 1 ----CAGCUGUUUAGGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACGAAAUGCAAAACAUUUUAAAAUUC ----..((.((((...((...((((..((((((((....)))))))).....(((...((....)).(((((...)))))....))))))).))...))))))................. ( -24.60) >DroSim_CAF1 82199 116 + 1 ----CAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ----..((((..........))))...(((((.......((((((.......)))))).........(((((...)))))....))))).......((((((.....))))))....... ( -23.90) >DroEre_CAF1 83456 120 + 1 AAAUGAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAACAUAAUUAAUGGUUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ....((((.(((...((((..(((...((((((((....))))))))...(((.....)))........)))...))))....)))..))))....((((((.....))))))....... ( -22.80) >DroYak_CAF1 81318 120 + 1 AAAUCAUUUGAUUACGGAUUUAGCUAUCAGGCAAAACUUUUUGACUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC .((((....))))..((((((......(((((.............(((.....)))...........(((((...)))))....))))).......((((((.....)))))).)))))) ( -18.80) >consensus ____CAGCUGUUUAAGGAUUUAGCAAUCAGGCAAAACUUUUUGCCUGCGAAUGGCAAAUAUAAUUAAUGGAUUUUAUCCAAUUAGCCUGCUUUCACAAAAUGCAAAACAUUUUAAAAUUC ...............((((((......(((((.......((((((.......)))))).........(((((...)))))....))))).......((((((.....)))))).)))))) (-20.46 = -20.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006