| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,952,985 – 12,953,105 |
| Length | 120 |
| Max. P | 0.933526 |
| Location | 12,952,985 – 12,953,105 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.58 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -23.78 |
| Energy contribution | -24.50 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12952985 120 - 23771897 CCCUGAAAUGUGUGCCAUGUUUACAAUAUUCCUGAAUGGAGCAACAUUAAGAUAUUGUUCGCUCAAGGUGUAACUAUUUGAAAUGCUCUUAACAAGGAUAUACCUUAGAAUUUUGGGGAC (((..((((.........((..((((((((....((((......))))..))))))))..))((((((((((.((..((((.......))))...)).)))))))).))))))..))).. ( -28.00) >DroSec_CAF1 70188 120 - 1 CCCUGAAAUGUGUGCCAUGUUUACAAUAUUCCUGAAUGGAGCAACAUUAAGAUAUUGUUCGCUCAAGGAGUAACUAUUUGAAAUCCUCUUAACAAGGAUAAACCAUACAAUUUCGGGGAC ((((((((((((((....(((((...(((((((.....((((((((.........)))).)))).)))))))...........((((.......)))))))))))))).))))))))).. ( -36.70) >DroSim_CAF1 75042 120 - 1 CCCUGAAAUGUGUGCCAUGUUUACAAUAUUCCUGAAUGGAGCAACAUUAAGAUAUUGUUCGCUCAAGGAGUAACUAUUUGAAAUGCUAUUAACAAGGAUAUACCAUACAAUUUCUGGGAC (((.((((((((((..((((((....(((((((.....((((((((.........)))).)))).))))))).(.....)...............))))))..))))).))))).))).. ( -30.20) >DroEre_CAF1 76273 120 - 1 CCCUGAAAUGUGUGCCAUGUUUACAAUAUUCCUGAAUGGAGCAACAUUAAGGUAUUGUUUGCUCAAGGAGUAACGAUUCGAAAUGCUCUUCACAGGGAUAUACUAUACAUUUUUGGGGAC (((.((((((((((...((....))(((((((((...((((((.......((.((((((.((((...))))))))))))....))))))...)))))))))..)))))))))).)))... ( -38.30) >DroYak_CAF1 74038 119 - 1 CCCUAAAAUGUGUGCCAUGCCUACGAUAUUCUUGAAUGGAGCAACAUUAAGAUAUUGUUCGCUCAAGGAGUAACUAUUGGAAAUGCUUUGAAUAGGUAUAUACUAUGUAUU-UUGGAGAC ..((((((((..((..(((((((...(((((((.....((((((((.........)))).)))).)))))))....(..((.....))..).)))))))....))..))))-)))).... ( -27.30) >consensus CCCUGAAAUGUGUGCCAUGUUUACAAUAUUCCUGAAUGGAGCAACAUUAAGAUAUUGUUCGCUCAAGGAGUAACUAUUUGAAAUGCUCUUAACAAGGAUAUACCAUACAAUUUUGGGGAC ((((((((((((((..((((((....(((((((.....((((((((.........)))).)))).))))))).(.....)...............))))))..)))))).)))))))).. (-23.78 = -24.50 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:21 2006