Locus 4450

Sequence ID 3L_DroMel_CAF1
Location 12,951,858 – 12,951,978
Length 120
Max. P 0.938375
window6921

overview

Window 1

Location 12,951,858 – 12,951,978
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.42
Mean single sequence MFE -31.52
Consensus MFE -28.86
Energy contribution -29.26
Covariance contribution 0.40
Combinations/Pair 1.05
Mean z-score -1.52
Structure conservation index 0.92
SVM decision value 1.29
SVM RNA-class probability 0.938375
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12951858 120 - 23771897
GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGGAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGCGAAUAAUUCCUA
((((..((.((((..((((....((((((((((...((..(((((((((.((......)).))))))))))).)).))))))))))))...)))).))..))))................ ( -35.30)
>DroSec_CAF1 69065 120 - 1
GCACUAAGUGUGUUCUCAUUUGGUCCCGUCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGUGAAUAAUUCCUA
..((((((((......))))))))..........((((.((((((((((.((......)).)))))))))).....))))((((((.((((((((.......))..)))))).)))))). ( -26.10)
>DroSim_CAF1 73921 120 - 1
GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGUGAAUAAUUCCUA
((((..((.((((..((((....((((((((((..((...(((((((((.((......)).))))))))))).)).))))))))))))...)))).))..))))................ ( -34.40)
>DroEre_CAF1 75176 120 - 1
GCAUUAAGUGUGUUCUCAUUUGGUCCUGGCCCAGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCAAUGCAUGUGAAGAAUUCCUA
(((((.((.((((..((((....(((..(((....((...(((((((((.((......)).)))))))))))....)))..)))))))...)))).)).)))))................ ( -29.30)
>DroYak_CAF1 72939 120 - 1
GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCCGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCAAUGCAUGUGAAGAAUUCCUG
(((((.((.((((..((((....((((((((.(..((...(((((((((.((......)).)))))))))))..).))))))))))))...)))).)).)))))................ ( -32.50)
>consensus
GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGUGAAUAAUUCCUA
(((((.((.((((..((((....((((((((((......((((((((((.((......)).))))))))))..)).))))))))))))...)))).)).)))))................ (-28.86 = -29.26 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:17 2006