Locus 4415

Sequence ID 3L_DroMel_CAF1
Location 12,907,034 – 12,907,154
Length 120
Max. P 0.984710
window6843

overview

Window 3

Location 12,907,034 – 12,907,154
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -35.42
Consensus MFE -33.49
Energy contribution -33.72
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -1.53
Structure conservation index 0.95
SVM decision value 1.98
SVM RNA-class probability 0.984710
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12907034 120 + 23771897
UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU
.((((((((((.((((((.......)))).))..))))))))))........(..((((...))))..)(((.....((((((((.(((.((....))....)))))))))))...))). ( -36.60)
>DroSim_CAF1 25624 120 + 1
UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAACGU
.((((((((((.((((((.......)))).))..))))))))))...(((..(..((((...))))..)........((((((((.(((.((....))....))))))))))).)))... ( -35.60)
>DroEre_CAF1 33035 120 + 1
UCCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCUAUUUGAAGUAAGCGCAGCGCUCACCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU
..........((((.((((((.(((((..((((........))))..))))))))))))))).......(((.....((((((((.(((.((....))....)))))))))))...))). ( -33.80)
>DroYak_CAF1 30440 120 + 1
UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUAAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU
.((((((((((.((((((.......)))).))..))))))))))........(..((((...))))..)(((.....((((((((.(((.((....))....)))))))))))...))). ( -36.60)
>DroAna_CAF1 54718 120 + 1
UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAAUAAGCGCACUGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU
.((((((((((.((((((.......)))).))..))))))))))............(((.......)))(((.....((((((((.(((.((....))....)))))))))))...))). ( -33.30)
>DroPer_CAF1 32296 120 + 1
UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU
.((((((((((.((((((.......)))).))..))))))))))........(..((((...))))..)(((.....((((((((.(((.((....))....)))))))))))...))). ( -36.60)
>consensus
UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU
.((((((((((.((((((.......)))).))..))))))))))........((.((((...)))).))(((.....((((((((.(((.((....))....)))))))))))...))). (-33.49 = -33.72 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:02 2006