Locus 441

Sequence ID 3L_DroMel_CAF1
Location 1,292,125 – 1,292,245
Length 120
Max. P 0.514883
window643

overview

Window 3

Location 1,292,125 – 1,292,245
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -28.26
Consensus MFE -18.11
Energy contribution -17.50
Covariance contribution -0.61
Combinations/Pair 1.32
Mean z-score -2.15
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.514883
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1292125 120 + 23771897
CUCUCCAAGGCGUACACCAUCGACAAUGCCAAUCCCAUGGUGCUCAAUCACCUGGCCAAUCACUUCUUCUUUAAGAAGGACUAUCAGAAAGUCCACCACCUGGCGCUGCACGCCUUCCAC
......(((((((.((.(.................((.((((......))))))((((.....(((((....)))))(((((.......)))))......))))).)).))))))).... ( -30.10)
>DroVir_CAF1 803 120 + 1
CUUUCUAAGGCCUAUACCAUUGACAAUGCAAAUCCUAUGGUCUUGAAUCAUUUGGCCAAUCACUUUUUUUUCAAAAAGGACUACCAGAAGGUGCACCAUCUGGCGCUGCACGCCUUCCAC
..(((.((((((.......(((......))).......)))))))))......(((...((.((((((....))))))))...(((((.((....)).)))))........)))...... ( -24.34)
>DroGri_CAF1 933 120 + 1
CUCUCUAAGGCCUACACCAUUGACAAUGCCAAUCCGAUGGUGCUCAAUCAUUUGGCCAAUCAUUUCUUCUUCAAGAAAGAUUACCAGAAGGUGCAUCAUCUCGCCCUGCACGCCUUCCAC
......(((((...((((((((............))))))))........(((((..((((.((((((....)))))))))).)))))..(((((...........)))))))))).... ( -29.80)
>DroWil_CAF1 809 120 + 1
UUGUCCAAGGCCUACACCAUCGAUAAUGCCAACCCCAUGGUAUUAAAUCAUUUGGCGAAUCAUUUCUUCUUUAAAAAGGAUUAUCAGAAGGUUCAUCAUCUGGCUUUGCAUGCUUUUCAU
.....(((((((....(((..((((((((((......))))))))..))...))).(((((..((((((((.....)))).....))))))))).......)))))))............ ( -24.50)
>DroMoj_CAF1 907 120 + 1
CUCUCCAAGGCGUACACUAUCGACAAUGCCAAUCCGAUGGUGUUGAAUCAUUUGGCCAACCAUUUCUUUUUCAAGAAGGACUACCAAAAGGUUCAUCAUUUGGCUCUGCACGCCUUCCAC
......((((((((((((((((............)))))))))((((((.(((((....((..(((((....)))))))....))))).))))))..............))))))).... ( -33.40)
>DroAna_CAF1 906 120 + 1
CUUUCCAAGGCGUACACGAUCGACAAUGCCAAUCCUAUGGUGCUCAACCAUCUGGCCAAUCACUUUUUCUUCAAGAAGGACUACCAAAAGGUCCACCAUUUGGCGCUGCACGCUUUUCAC
......(((((((.((((.........((((.....(((((.....))))).))))...((.((((((....))))))))...(((((.((....)).))))))).)).))))))).... ( -27.40)
>consensus
CUCUCCAAGGCCUACACCAUCGACAAUGCCAAUCCCAUGGUGCUCAAUCAUUUGGCCAAUCACUUCUUCUUCAAGAAGGACUACCAGAAGGUCCACCAUCUGGCGCUGCACGCCUUCCAC
......(((((................(((((....(((((.....))))))))))......((((((....)))))).....(((((.((....)).)))))........))))).... (-18.11 = -17.50 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006