| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,875,646 – 12,875,766 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 12,875,646 – 12,875,766 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -39.14 |
| Consensus MFE | -25.11 |
| Energy contribution | -24.83 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12875646 120 - 23771897 CGCGAAUUCUUCAGAAUACGUGCAGCUGGCUAGGCUGCCGAAGCUGGGGGAACUAUCCUACUUUGGCAUUCGCAGAAGCGGCUCCUUUGAACCACUUCUCUCAGCUCUAGCUGCCAAAUC .(((.((((....)))).)))((((((((...(((((((((((.(((((......))))))))))))....(.(((((.((.((....)).)).))))))..))))))))))))...... ( -45.30) >DroSec_CAF1 2653 120 - 1 CGCGAAUUCUUCAGAAUACUUGCAGCUGGCUAGGCUACCGAAGCUGCGGCAACUAUCCUACUUUGGGAUUCGCAGAAGCGGCUCCUUUGAACCACUUCUUUCAGCUCUAGCUGCCAAAUC .(((((((((..((.......((((((((........))..))))))(....).......))..)))))))))(((((.((.((....)).)).)))))..((((....))))....... ( -37.20) >DroSim_CAF1 194 120 - 1 CGCGAAUUCUUCAGAAUACUUGCAGCUGGCUAGGCUACCGAAGCUGCGCGAACUAUCCUACUUUGGGAUUCGCAGAAGCGGCUCCUUUGAACCACUUCUUUCAGCUCUAGCCGCCAAAUC .((((((((....))))..))))...((((..(((((..((.((((.((((...(((((.....)))))))))(((((.((.((....)).)).)))))..))))))))))))))).... ( -39.60) >DroEre_CAF1 3674 120 - 1 CGCGAAUUCUUCAGAGUAUUUGCAACUGGCUAGGCUACCCAAGCUCCGGGAACUAUCGUACUGUGGUAUUCGCAGAAGCGGCUCCUUUGAACCACUUCUUUCAGCUCUGGCUGCCAAAUC .((((((...(((.(((((......((((...((((.....))))))))........))))).))).))))))(((((.((.((....)).)).)))))..((((....))))....... ( -34.54) >DroYak_CAF1 182 120 - 1 CGCGAAUUCUUCAGAGUACUUGCAACUGGCUGGGCUACCGAAGCUCCGGGAACUAUCGUACUUUGGGAUUCGCAGAAGCGGCUUCUUUGAGCCACUACUAUCAGCACUGGCUGCCAAAUC .((((((((..((((((((..........(((((((.....))).))))((....))))))))))))))))))((.((.(((((....))))).)).))..((((....))))....... ( -40.30) >DroAna_CAF1 199 120 - 1 AGCAGAAGCCUCGACCUACAAGCCACUGGCCAGACUUCCCAGGCUCCGAGAACUCUACCACUUUGGUAUCCGCAGGAGUGGCUCCUUUGAGCCGCUUCUCUCCGAUCUGGCCACACAUUC .((....)).................((((((((((....))..((.((((....((((.....))))......((((((((((....)))))))))))))).))))))))))....... ( -37.90) >consensus CGCGAAUUCUUCAGAAUACUUGCAACUGGCUAGGCUACCGAAGCUCCGGGAACUAUCCUACUUUGGGAUUCGCAGAAGCGGCUCCUUUGAACCACUUCUUUCAGCUCUAGCUGCCAAAUC .(((((((((..((.......((.....))..((((.....))))...............))..)))))))))....((((((...(((((........)))))....))))))...... (-25.11 = -24.83 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:36 2006