Locus 4384

Sequence ID 3L_DroMel_CAF1
Location 12,857,924 – 12,858,014
Length 90
Max. P 0.886784
window6791

overview

Window 1

Location 12,857,924 – 12,858,014
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 99.56
Mean single sequence MFE -16.80
Consensus MFE -16.80
Energy contribution -16.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 1.00
SVM decision value 0.94
SVM RNA-class probability 0.886784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12857924 90 - 23771897
CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA
((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30)
>DroSec_CAF1 96373 90 - 1
CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA
((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30)
>DroSim_CAF1 97764 90 - 1
CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA
((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30)
>DroEre_CAF1 101626 90 - 1
CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA
((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30)
>DroYak_CAF1 107744 90 - 1
CGGAAGCGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA
((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -14.80)
>consensus
CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA
((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. (-16.80 = -16.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:13 2006