Locus 4379

Sequence ID 3L_DroMel_CAF1
Location 12,853,161 – 12,853,254
Length 93
Max. P 0.843486
window6777

overview

Window 7

Location 12,853,161 – 12,853,254
Length 93
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.48
Mean single sequence MFE -23.18
Consensus MFE -20.21
Energy contribution -20.81
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.87
SVM decision value 0.76
SVM RNA-class probability 0.843486
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12853161 93 - 23771897
GCCCAGUCUUGAACUUGUGUGGAUUUAAGUUCUUCUUACCCAUUAAUUAUUUAUGAGC---UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA
((((......(((((((........)))))))...((((((((...(((....)))..---.))))))))............)))).......... ( -25.50)
>DroSec_CAF1 91516 92 - 1
GCCCAGUCUUGAACUUGUGUAG-UUUAAGUUCUUCUUAGCCAUUAAUUAUUUAUGAGC---UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA
((((((.((((((((.....))-))))))..))...(((((((.........))).))---))..((((.......))))..)))).......... ( -21.90)
>DroSim_CAF1 92197 92 - 1
GCCCAGUCUUGAACUUGUGUGG-UUUAAGUUCUUCUUAGCCAUUAAUUAUUUAUGAGC---UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA
((((((.((((((((.....))-))))))..))...(((((((.........))).))---))..((((.......))))..)))).......... ( -21.90)
>DroEre_CAF1 96633 94 - 1
GCCCAGUCUUGAACUUGUGUGG-CUUAAGUUCUCCUUACCCAUUAAUUAUUUAUGAGUU-UUGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA
((((......(((((((.....-..)))))))...((((((((.((((.......))))-..))))))))............)))).......... ( -24.70)
>DroYak_CAF1 102684 95 - 1
GCCCAGUCUUGAACUUGUGUGG-UUUAAGUUCUUCUUACCCAUUAAUUAUUUAUGAGUUUUUGCGGGUAAAACGUAUGCCAAGGGCAACGAUAAGA
((((((.((((((((.....))-))))))..))..((((((..(((..(((....)))..))).))))))............)))).......... ( -21.90)
>consensus
GCCCAGUCUUGAACUUGUGUGG_UUUAAGUUCUUCUUACCCAUUAAUUAUUUAUGAGC___UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA
((((......(((((((........)))))))...((((((((...................))))))))............)))).......... (-20.21 = -20.81 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:59 2006