Locus 4376

Sequence ID 3L_DroMel_CAF1
Location 12,836,355 – 12,836,466
Length 111
Max. P 0.603758
window6774

overview

Window 4

Location 12,836,355 – 12,836,466
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.62
Mean single sequence MFE -23.92
Consensus MFE -7.43
Energy contribution -8.39
Covariance contribution 0.96
Combinations/Pair 1.33
Mean z-score -2.07
Structure conservation index 0.31
SVM decision value 0.14
SVM RNA-class probability 0.603758
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12836355 111 + 23771897
UUUCUUUAAAAAAAAAAAUUGUUGAUCUUAACUU---------UGAUUUAUUUUUGGUUGUCUCAAGAUCUUGGCUAGAGUUUAACUUCGCUUUUCUUAAGGUUGACAAUUCCUCCUCUA
................((((((..(((((((((.---------.((.....))..)))).....((((....(((..(((.....))).)))..)))))))))..))))))......... ( -17.80)
>DroSec_CAF1 77345 111 + 1
UUUCUUUAAGAAAAAAAAUUGUUGAUCUUAGCUU---------UGAUUUAUUGCUGUUUGUUUCAAGAUCUUGGCUAGAGUUUAACUUUUCUUUUCCUAAGGUUGACAAUUCCUCCUCUA
........(((.....((((((..(((((((((.---------.(((((...((.....))....)))))..))).((((........)))).....))))))..)))))).....))). ( -22.10)
>DroSim_CAF1 76568 111 + 1
UUUCUUUAAGAAAAAAAAUUGUUGAUCUUAGCUU---------UGAUUUAUUGCUGUUUGUCUCAAGAUCUUGGCUAGAGUUUAACUUUUCUUUUCUUAAGGUUGACAAUUCCUCCUCUA
...(((((((((((.(((..(((((.(((((((.---------.(((((...((.....))....)))))..)))).))).))))).))).))))))))))).................. ( -24.30)
>DroEre_CAF1 81147 120 + 1
UUUCUUUAAGAAUUGAUAUUGUGCCUCUUAGCUUAGCAACUGCUGAAUUAUUAGUGUUUGUCUCAAGUUCCUGGCUAGGUUUUAUCUUUCCUUGACUGAGGGUUGACAAUUCUUCCUCUA
.......((((((((.......(((....((((((((((..(((((....)))))..))).)).)))))...))).........((..(((((....)))))..))))))))))...... ( -26.30)
>DroYak_CAF1 87338 120 + 1
CUUCUUUAAGAAAAACAAUGGUGGAUUUAAGCUUGGUAUCUGAUGAAUUAUUCGUGUUUGUCUCAAGUUCCUGGCUUCUAUCUAUCUUUUCUUGCCUUAAGGUGGACACUUCCUCCUCUA
......((((((((.....(((((((..(((((.((.....((..(((.......)))..)).......)).)))))..))))))))))))))).....(((.(((....))).)))... ( -29.10)
>consensus
UUUCUUUAAGAAAAAAAAUUGUUGAUCUUAGCUU_________UGAUUUAUUGCUGUUUGUCUCAAGAUCUUGGCUAGAGUUUAACUUUUCUUUUCUUAAGGUUGACAAUUCCUCCUCUA
........(((.....((((((..(((((((.............(((((................)))))..((..((((........))))..)))))))))..)))))).....))). ( -7.43 =  -8.39 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:56 2006