| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,801,076 – 12,801,196 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 12,801,076 – 12,801,196 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.50 |
| Mean single sequence MFE | -42.56 |
| Consensus MFE | -27.60 |
| Energy contribution | -27.02 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12801076 120 - 23771897 CUCAUCUGGGCGGUCAAUGUCAGUAUGCUGUAUGCCUCGCGCUUCAUCCUCGGUAUCGCCGGUGGAGCUUUCUGUGUGACCGCUCCCAUGUACACGGGUGAGAUUGCUCAGAAGGAGAUU (((.(((((((((((.(((.(((....))))))...(((((((((((...(((.....))))))))))...(((((((............))))))))))))))))))))))..)))... ( -43.60) >DroVir_CAF1 59073 120 - 1 CUGAUCUGGGCACAGAAUGUGGUCAUGAUGUUUGUGGCACGCUUCAUUCUGGGUAUCGCUGGCGGUGCCUUCUGCGUGACCGCGCCCAUGUACACUGGCGAAAUUGCCCAAAAGGAUAUC ...(((((((((((..(((....)))..)))..(((((((((........((((((((....))))))))...))))).)))))))).........((((....)))).....))))... ( -42.80) >DroGri_CAF1 56048 120 - 1 CUCAUUUGGGCACAGAAUGUGGGCAUGAUGUAUGCCGCACGUUUCAUUCUGGGUAUCGCUGGCGGUGCCUUCUGUGUGACAGCGCCUAUGUACACGGGCGAGAUUGCCCAAAAGGAUAUU .((.((((((((......(((((((((...)))))).)))(((.(((...((((((((....))))))))...))).)))..(((((........)))))....)))))))).))..... ( -46.30) >DroWil_CAF1 60724 120 - 1 CUCAUUUGGGCCAAGAAUCUGGCCAUGAUGUAUUCGUCACGUUUUAUUCUGGGUAUCGCUGGCGGUGCCUUCUGUGUGACAGCUCCCAUGUAUACGGGUGAGAUAGCCCAAAAGGAAAUC .((.(((((((.....((((.(((.(((((....))))).(((.(((...((((((((....))))))))...))).)))................))).)))).))))))).))..... ( -37.60) >DroMoj_CAF1 53209 120 - 1 CUGAUCUGGGCACAGAACGUGAUCAUGAUGUACAUUGCACGUUUCAUCCUGGGUAUCGCUGGCGGUGCCUUCUGCGUAACUGCGCCCAUGUACACUGGUGAAAUUGCCCAGAAGGAUAUU ((..((((((((((.....)).((((.((((((((((((.(((.......((((((((....)))))))).......)))))))...))))))).).))))...)))))))).))..... ( -40.74) >DroAna_CAF1 37541 120 - 1 CUCAUCUGGGCGCCCAAUGUGGGCUUGAUGUACGCCUCUCGCUACAUCCUCGGUAUUGCUGGCGGUGCUUUCUGUGUGACUGCUCCCAUGUACACGGGUGAAAUUGCCCAGAAGGACAUU .((.(((((((((((.....))))..((((((.((.....))))))))((((((((((..((((((((.......)).))))))..)).)))).)))).......))))))).))..... ( -44.30) >consensus CUCAUCUGGGCACAGAAUGUGGGCAUGAUGUAUGCCGCACGCUUCAUCCUGGGUAUCGCUGGCGGUGCCUUCUGUGUGACAGCGCCCAUGUACACGGGUGAAAUUGCCCAAAAGGAUAUU ....((((((((.....((((..((((..(..((...(((((........((((((((....))))))))...)))))..))..).))))..))))........))))))))........ (-27.60 = -27.02 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:35 2006