Locus 4355

Sequence ID 3L_DroMel_CAF1
Location 12,780,829 – 12,780,941
Length 112
Max. P 0.581500
window6742

overview

Window 2

Location 12,780,829 – 12,780,941
Length 112
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 83.45
Mean single sequence MFE -19.30
Consensus MFE -13.44
Energy contribution -14.63
Covariance contribution 1.19
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.70
SVM decision value 0.10
SVM RNA-class probability 0.581500
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12780829 112 + 23771897
UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCAUCAUCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC
..(((((.......((((.((((((......))))))......))))(((..(((((((...............................)))))))...)))))))).... ( -20.78)
>DroSec_CAF1 22575 109 + 1
UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC
..(((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))).... ( -20.89)
>DroSim_CAF1 21885 109 + 1
UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC
..(((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))).... ( -20.89)
>DroEre_CAF1 25972 109 + 1
UUAAGAUACGCACCCAACAACUGCACACACAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUCUAUC
...((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))..... ( -20.09)
>DroYak_CAF1 24556 109 + 1
UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC
..(((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))).... ( -20.89)
>DroAna_CAF1 16769 86 + 1
UUAAGAUACGCACCCAGCCAUUUCUUCCUCAUGCACCAUCAU---------UGCUGUCAUCGGUUCAAGUCACUUCA---UCGUCAUCGGUGGCACCC--------------
..((((...((.....))....))))......(((.......---------)))((((((((((.............---.....))))))))))...-------------- ( -12.27)
>consensus
UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA___UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC
.............(((...((((((......))))))...............(((((((...............................)))))))...)))......... (-13.44 = -14.63 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:25 2006