Locus 4317

Sequence ID 3L_DroMel_CAF1
Location 12,695,489 – 12,695,590
Length 101
Max. P 0.999219
window6678

overview

Window 8

Location 12,695,489 – 12,695,590
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 95.05
Mean single sequence MFE -22.07
Consensus MFE -20.60
Energy contribution -20.93
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.30
Structure conservation index 0.93
SVM decision value 3.44
SVM RNA-class probability 0.999219
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12695489 101 - 23771897
AAUGUACUAAUUAGCUAGGAAAACGUAUUUUCCAGCAUAAACAUACAAUUUGCAAAAACAGCAACCGGCUGAAGGGCAUGGCUUGCAUAAUAAGCUACACA
..((((((.(((((((.((((((....)))))))))........................((((((((((....))).))).)))).)))).)).)))).. ( -22.50)
>DroSec_CAF1 59236 100 - 1
AAUGUACUAAUUAGCUACGAAAACGUAUUUUCCAGCAUAAACAUACAAUUUGCAAAAACAGCAACCGGCUGA-GGGCAUGGCUUGCAUAAUAAGCUACACA
.............((((((....))))....((.(((.............))).....((((.....)))).-)))).(((((((.....))))))).... ( -17.52)
>DroSim_CAF1 57953 101 - 1
AAUGUACUAAUUAGCUAGGAAAACGUAUUUUCCAGCAUAAACAUACAAUUUGCAAAAACAGCAACCGGCUGAAGGGCAUGGCUUGCAUAAUAAGCUACACA
..((((((.(((((((.((((((....)))))))))........................((((((((((....))).))).)))).)))).)).)))).. ( -22.50)
>DroEre_CAF1 61525 101 - 1
AAUGUACUAAUUAGCUAGGAAAACGUAUUUUCCAGCAUAAACAUACAAUUUGCAAAAACAGCAACCGGCUGAAGGGCAUGGCUUGCAUAAUAAGCUACAUA
.(((((((.(((((((.((((((....)))))))))........................((((((((((....))).))).)))).)))).)).))))). ( -23.80)
>DroYak_CAF1 61637 96 - 1
AAUGUACUAAUUAGCUAGGAAAACGUAUUUUCCAGCGCAAACAUACA-----CGAAAACAGCAACCGGCUGAAGGGCAUGGCUUGCAUAAUAAGCUACACA
..((((((.(((((((.((((((....)))))))))...........-----........((((((((((....))).))).)))).)))).)).)))).. ( -22.50)
>DroAna_CAF1 59719 101 - 1
AAUGUACUAAUUAGCAAGGAAAACGUAUUUUCCAGCGUAAACAUACAAUUUACAAAAACAGCAACCGGCUGAAGGGCAUGGUUUGCAUAAUAAGCUACAUA
.(((((((.((((((((((((((....)))))).(((((((.......))))).....((((.....))))....)).....)))).)))).)).))))). ( -23.60)
>consensus
AAUGUACUAAUUAGCUAGGAAAACGUAUUUUCCAGCAUAAACAUACAAUUUGCAAAAACAGCAACCGGCUGAAGGGCAUGGCUUGCAUAAUAAGCUACACA
..((((((.(((((((.((((((....)))))))))........................((((((((((....))).))).)))).)))).)).)))).. (-20.60 = -20.93 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:23 2006