Locus 4314

Sequence ID 3L_DroMel_CAF1
Location 12,685,764 – 12,685,859
Length 95
Max. P 0.990205
window6673

overview

Window 3

Location 12,685,764 – 12,685,859
Length 95
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -23.16
Consensus MFE -20.75
Energy contribution -20.59
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.24
Structure conservation index 0.90
SVM decision value 2.20
SVM RNA-class probability 0.990205
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12685764 95 - 23771897
-UAUAUA----CUCCACCUAUUGAUUGGGGUUUUAUCUUCUUUUUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU
-......----...(((((.((((((((..(......((((.........))))......)..))))))))))))).(((((((....))).)))).... ( -22.20)
>DroSec_CAF1 49536 91 - 1
-UAUAUA----CUCCACCUAUUGAUCGGGU----AUUUCUUUGUUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU
-......----...(((((.((((((((((----(((.((..(....)..)))))))......))))))))))))).(((((((....))).)))).... ( -23.00)
>DroSim_CAF1 48309 87 - 1
-UAUAUA----CUCCACCUAUUGAUCGGGU----AUUUU----UUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU
-......----...(((((.((((((((((----(((((----.......)))))))......))))))))))))).(((((((....))).)))).... ( -24.70)
>DroEre_CAF1 50164 81 - 1
AUAUAUA----CUUCACCUAUUGAUCGGA---------------UUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU
.......----...(((((.((((((((.---------------(((..(((....))).)))))))))))))))).(((((((....))).)))).... ( -22.90)
>DroYak_CAF1 51401 85 - 1
AUAUAUACAUACAUCACCUAUUGAUCGGG---------------UUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU
..............(((((.((((((((.---------------.....(((....)))....))))))))))))).(((((((....))).)))).... ( -23.00)
>consensus
_UAUAUA____CUCCACCUAUUGAUCGGG_____AU_U_____UUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU
..............(((((.((((((((...................................))))))))))))).(((((((....))).)))).... (-20.75 = -20.59 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:18 2006