Locus 4304

Sequence ID 3L_DroMel_CAF1
Location 12,629,812 – 12,629,902
Length 90
Max. P 0.657234
window6659

overview

Window 9

Location 12,629,812 – 12,629,902
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 87.22
Mean single sequence MFE -25.35
Consensus MFE -22.36
Energy contribution -22.93
Covariance contribution 0.56
Combinations/Pair 1.22
Mean z-score -1.47
Structure conservation index 0.88
SVM decision value 0.26
SVM RNA-class probability 0.657234
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12629812 90 + 23771897
AUUUAUUUCAAGUGUAAAAUUGAGGAAUUCGAUGACAGGGGGAUAAAUGUUUUAAUCGUGGGUGGUUGGGCGUAUUGAUCGCCUGCCUGU
((((((..(...(((...((((((...)))))).)))..)..)))))).........(..((((((..(.....)..))))))..).... ( -23.90)
>DroSim_CAF1 121177 90 + 1
AUUUAUUUCAAGUGUAAAAUUGAGAAAUUUGAUGACAGGGGGAUAAAUGUGCUAAUGGCGGGUGGUUGGGCGGAUUGAUCGCCUGCCUGU
((((((..(...(((.(((((....)))))....)))..)..))))))........((((((((((..(.....)..))))))))))... ( -28.20)
>DroEre_CAF1 121667 90 + 1
AUUCACUCCAAGUGUAAAAUAGGGGAACGCGAUGACAGGGGGAUAUAUGUUCUAAUGGUGGGUGGUUGGGCGGCCUGAUCGCCUGCCCGU
.....((((............))))...(((........(((((....)))))...((..((((((..((...))..))))))..))))) ( -26.30)
>DroYak_CAF1 123225 90 + 1
AUUUACUUCAAGUGUAAAAUCGAGGAAUGUGAUGACAGGGGGAUAUGUGUUCUAAUGGUGGGUGGUUGGGCGAUCUGAUCGCCUGCCCGU
.(((((.......))))).....((..........((..(((((....)))))..))(..((((((..(.....)..))))))..))).. ( -23.00)
>consensus
AUUUACUUCAAGUGUAAAAUUGAGGAAUGCGAUGACAGGGGGAUAAAUGUUCUAAUGGUGGGUGGUUGGGCGGACUGAUCGCCUGCCCGU
(((((((((...(((...((((.......)))).)))..)))))))))........((((((((((..(.....)..))))))))))... (-22.36 = -22.93 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:05 2006