Locus 4298

Sequence ID 3L_DroMel_CAF1
Location 12,608,668 – 12,608,771
Length 103
Max. P 0.679580
window6651

overview

Window 1

Location 12,608,668 – 12,608,771
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.10
Mean single sequence MFE -32.47
Consensus MFE -22.06
Energy contribution -22.17
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.22
Structure conservation index 0.68
SVM decision value 0.30
SVM RNA-class probability 0.679580
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12608668 103 + 23771897
CUACACUCCGUCCGGAUGGGUAUGUGCGCAAAACCAG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG---------------
(.((.(((((((..(((((..((((((((.......)--))))))))))))....(((((((((......))))).))))..))))))).)).)...........--------------- ( -34.00)
>DroVir_CAF1 107102 88 + 1
-------CCGACCC--------UAGGCGCACAAUGUG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG---------------
-------((.((((--------...((((((...)))--)))((.(((((((...((.((((((......)))))).))..)))))))..)).......))))))--------------- ( -29.10)
>DroPse_CAF1 98441 93 + 1
---UGUUCCAUCCGGGCGG-------CGC--AACCAGCGCGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG---------------
---....((((((((.(((-------(((--.....(....)...(((((((...((.((((((......)))))).))..)))))))))))))...))))))))--------------- ( -32.00)
>DroEre_CAF1 99700 89 + 1
CUCCACUCCGGCCGGAUGGGU--------------AG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG---------------
..((((.((((((.....)))--------------.(--(((...(((((((...((.((((((......)))))).))..)))))))))))......)))))))--------------- ( -26.60)
>DroAna_CAF1 93528 117 + 1
AUCCAUUCCGUCCGUG-GGGCAUGUGCGCCAAACCAG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGGCAGUGGCGGUGAAAG
..(((((((..(((((-(.((.(((((((.......)--))))))(((((((...((.((((((......)))))).))..))))))))).)))....)))..)).)))))......... ( -40.50)
>DroPer_CAF1 100422 93 + 1
---UGUUCCAUCCGGGCGA-------CGC--AACCAGCGCGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG---------------
---....((((((((.(((-------(((--.....(....)...(((((((...((.((((((......)))))).))..)))))))))))))...))))))))--------------- ( -32.60)
>consensus
___CAUUCCGUCCGGG_GG_______CGC__AACCAG__CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG_______________
.......((((((...........................(((.((((....)))).))).....(((((((.((((.....)))).....))))))).))))))............... (-22.06 = -22.17 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:57 2006