Locus 4271

Sequence ID 3L_DroMel_CAF1
Location 12,510,192 – 12,510,300
Length 108
Max. P 0.538935
window6600

overview

Window 0

Location 12,510,192 – 12,510,300
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.32
Mean single sequence MFE -28.68
Consensus MFE -17.83
Energy contribution -17.37
Covariance contribution -0.47
Combinations/Pair 1.42
Mean z-score -2.79
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.538935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12510192 108 + 23771897
AUUCUAAAUCUUACUAUCUUGACUCAAGACAAACAUAUCCGUGUGUGUUACUCCUCUGUCCGCCUCCUUCUUCAUGGCGGCCCUCGAGUAACCGCCCCACACGUAGAU
..((((..........(((((...)))))..........((((((.(((((((....(.(((((...........))))))....))))))).....)))))))))). ( -28.20)
>DroVir_CAF1 1243 107 + 1
AGUG-GUUGCUUACUGUCCACAUCGAGCGCAAACAUGUCCGUGUGCGUGAUGCCCCGAUCCAGAUCCUUCUUCAUCGAGGUUCUCGCGUAGCCGCCCCAAACGUAGAU
.(((-(((((........((((.((..((......))..)))))).((((.(((.((((..(((....)))..)))).)))..))))))))))))............. ( -31.40)
>DroSec_CAF1 730 108 + 1
AUUCUAGCUCUUACUAUCUUGACUCAGGACAAACAUAUCCGUGUGUGUUACUCCUCUGUCCGCCUCCUUCUUCAUGGAGGCCCGCGAGUAACCGCCCCACACGUAGAU
..((((..........(((((...)))))..........((((((.(((((((....((..((((((........))))))..))))))))).....)))))))))). ( -30.40)
>DroSim_CAF1 729 108 + 1
AUUCUAACUCUUACUAUCUUGACUCAGGACAAACAUAUCCGUGUGUGUUACUCCUCUGUCCGCCUCCUUCUUCAUGGAGGCCCGCGAGUAACCGCCCCAAACGUAGAU
..((((..............(((..((((..(((((((....)))))))..))))..))).((((((........))))))..(((......)))........)))). ( -28.90)
>DroEre_CAF1 729 108 + 1
AGUUUUAAUCUUACUGUCUUGACUCAAGACAAACAUAUCCGUGUGUGUUACUCCUCUAUCCGCUUCCUUCUUCAUGGAGGCCCUCGAGUAACCUCCCCAAACAUAGAU
.((((.........(((((((...))))))).(((((....)))))(((((((........((((((........))))))....)))))))......))))...... ( -24.90)
>DroYak_CAF1 729 108 + 1
ACUUUCAAUCGUACUGUCUUGACUCAGGACAAACAUAUCCGUGUGCGUUACUCCUCUAUCCGCCUCCUUCUUCAUGGAGGCCCUCGAGUAACCUCCCCAAACAUAGAU
.......((((((((((((((...))))))).((......))))))(((((((........((((((........))))))....))))))).............))) ( -28.30)
>consensus
AUUCUAAAUCUUACUAUCUUGACUCAGGACAAACAUAUCCGUGUGUGUUACUCCUCUAUCCGCCUCCUUCUUCAUGGAGGCCCUCGAGUAACCGCCCCAAACGUAGAU
.............((((((((...))))).............(((.(((((((........((((((........))))))....))))))))))........))).. (-17.83 = -17.37 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:10 2006