Locus 4268

Sequence ID 3L_DroMel_CAF1
Location 12,504,021 – 12,504,123
Length 102
Max. P 0.954075
window6597

overview

Window 7

Location 12,504,021 – 12,504,123
Length 102
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 89.63
Mean single sequence MFE -38.56
Consensus MFE -33.46
Energy contribution -33.14
Covariance contribution -0.32
Combinations/Pair 1.13
Mean z-score -1.78
Structure conservation index 0.87
SVM decision value 1.44
SVM RNA-class probability 0.954075
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12504021 102 + 23771897
GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUUAACAAUUCCACAGAUGUGUGCAGGCGGGUGUGACCGUCGUUUCGCGGCACUGUUCCACCCU----------
((((((.(((.((((((((.....))))))...((((((..........((((....))))..(((((......))))))))))).)).))).)).))))..---------- ( -35.20)
>DroSec_CAF1 29619 102 + 1
GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUAACCAAUUCCACAGAUGUGAGCAGGCGGGUGUGACCGUCGUUUCGCGGCACCGUUCCACCCU----------
((((((.(((.((((((((.....))))))...((((((..........(((....)))....(((((......))))))))))).)).))).)).))))..---------- ( -37.20)
>DroSim_CAF1 29297 102 + 1
GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUAACCAAUUCCACAGAUGUGUGCAGGCGGGUGUGACCGUCGUUUCGCGGCACCGUUCCACCCU----------
((((((.(((.((((((((.....))))))...((((((..........((((....))))..(((((......))))))))))).)).))).)).))))..---------- ( -37.00)
>DroEre_CAF1 30623 112 + 1
GGUGAAAGGUUCCGUCCGGUUUUUCCGGAUUUUCGAAAUUUACCAAUUCCACAGAUGUGUGCUGGUGGGUGUGACCGUCGGUUCGCGGCACCGUUACACCCUGCUAAGCGCA
((((((...(((.((((((.....))))))....))).)))))).............((((((((((((((((((.((((.....))))...))))))))).))).)))))) ( -43.10)
>DroYak_CAF1 29999 112 + 1
GGUGAAAGGUUCCGUCCGGUUUUUCCGGAUUUUCGAAAUUUACCAAUUCCACAGAUGUGAGCUGGCGGGUGUGACCGUUGGUUCGCGGCACCGUUACACCCUACUAAGCGCA
((((((.(((.((((((((.....))))))..........................((((((..((((......))))..)))))))).))).)).))))............ ( -40.30)
>consensus
GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUUACCAAUUCCACAGAUGUGUGCAGGCGGGUGUGACCGUCGUUUCGCGGCACCGUUCCACCCU__________
((((((.(((.((((((((.....))))))...((((((..........(((....)))....(((((......))))))))))).)).))).)).))))............ (-33.46 = -33.14 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:06 2006