| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,503,563 – 12,503,653 |
| Length | 90 |
| Max. P | 0.786481 |
| Location | 12,503,563 – 12,503,653 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.62 |
| Mean single sequence MFE | -33.55 |
| Consensus MFE | -11.79 |
| Energy contribution | -13.23 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12503563 90 - 23771897 UCUGCCUGUAUGUGCGUAAGUGUGCGUGCAUGUGCAUAUG-------------UGCAUACAUACUGACGCACAGUCGCGGGCAGCGAACUAGUGCCACAUGUG .((((((((.(((((((.((((((..(((((((....)))-------------))))..)))))).)))))))...))))))))................... ( -41.10) >DroSec_CAF1 29170 90 - 1 UAUGCCUGUAUGUGCGUAGGUGUGCGUGCAUGUGCAUAGG-------------CGCAUACAUACUGACGCACAGUCGCGGGCAGCUAACUAGUGCCACCUGUG ..(((((((.(((((((.((((((..(((....((....)-------------))))..)))))).)))))))...)))))))((........))........ ( -36.30) >DroSim_CAF1 28848 90 - 1 UAUGCCUGUAUGUGCGUAGGUGUGCGUGCAUGUGCAUAGG-------------CGCAUACAUACUGACGCACAGUCGCGGGCAGCGAACUAGUGCCACCUGUG ..(((((((.(((((((.((((((..(((....((....)-------------))))..)))))).)))))))...)))))))(((......)))........ ( -36.20) >DroEre_CAF1 30196 76 - 1 CAUGUAUGU--------------GCGUGCAUGUGCAUGGG-------------CGCAUACAUACUGACGCACAGUCGGGGUCAGCGCACUAGUGCCACAAGUG .((((((((--------------((((((....))))..)-------------))))))))).(((((.....))))).....((((....))))........ ( -28.20) >DroYak_CAF1 29542 90 - 1 CAUGUAUGUGCGAGCAUAGGUGUGCGUGCAUGUGCAUGGG-------------CGCAUACAUACUGACGCACAGUCGGGGUCAGCGAACUAGUGCCACAAGUG ((((((((((((.((((....)))).))))))))))))((-------------(((.......(((((.....)))))(((......))).)))))....... ( -36.00) >DroAna_CAF1 26450 93 - 1 -AGGUAUGG----GCG-----GGACAUGCAUGUGCAUCGGAGGCCUGCAGACACACACACAUGCAUGGGAACAGUCGGGGUCAAUGAAAUAGUCCAGUUACUG -.(((((((----((.-----...((((((((((........(....).........))))))))))((..(.....)..)).........)))))..)))). ( -23.53) >consensus UAUGCAUGUAUGUGCGUAGGUGUGCGUGCAUGUGCAUAGG_____________CGCAUACAUACUGACGCACAGUCGCGGGCAGCGAACUAGUGCCACAAGUG (((((.((((((..((....))..))))))...)))))..............................(((((((((.......)).))).))))........ (-11.79 = -13.23 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:05 2006