Locus 426

Sequence ID 3L_DroMel_CAF1
Location 1,237,578 – 1,237,675
Length 97
Max. P 0.625989
window622

overview

Window 2

Location 1,237,578 – 1,237,675
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.79
Mean single sequence MFE -22.30
Consensus MFE -16.23
Energy contribution -16.12
Covariance contribution -0.11
Combinations/Pair 1.17
Mean z-score -1.32
Structure conservation index 0.73
SVM decision value 0.19
SVM RNA-class probability 0.625989
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1237578 97 + 23771897
CACUAACCCAAAUUCAAUUUUCAUUUCAGCGCGAAAACGAGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA
.............((((((((((...((((.((....)).))))...(((.((((..(((((....))))..)..)))).)))....)))))))))) ( -26.30)
>DroSec_CAF1 16483 97 + 1
CACUAACCCGAAUUCGGUUUCCUUUUCAGCGCGAAAACGAGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA
..........((((((((((((....((((.((....)).))))...))))))).(((((.....))))).....((((......)))).))))).. ( -22.30)
>DroEre_CAF1 16716 96 + 1
UAUUAACUCGAUUU-UGCUUACUUUUUAGCGCGAAAACGGGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA
......((((((((-.((........((((.((....)).)))).))(((.((((..(((((....))))..)..)))).)))))))))))...... ( -24.30)
>DroWil_CAF1 14575 91 + 1
CU-U----AUU-UUCUUUUUGGUUUUUAGCGCGGAAACGAGCUAUUAGAAAAUUGCGCCAUUUACUGGUUAAGUACAACAUCCAAAUUGACUAAUUA
..-.----...-.((..(((((....((((.((....)).)))).........(((((((.....))))...)))......)))))..))....... ( -17.80)
>DroYak_CAF1 16719 96 + 1
UGUUAACUGGAUUU-UGCUUACUUUUCAGCGCGAAAACGGGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA
......((.(((((-.((........((((.((....)).)))).))(((.((((..(((((....))))..)..)))).)))))))).))...... ( -22.70)
>DroAna_CAF1 14425 88 + 1
--------CGUUUU-UAUUAAUAUUUUAGCGCGUAGACGGGCUAUACGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA
--------.(((((-((.........((((.((....)).))))...(((.((((..(((((....))))..)..)))).)))....)))))))... ( -20.40)
>consensus
CA_UAAC_CGAUUU_UGUUUACUUUUCAGCGCGAAAACGAGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA
..........................((((.((....)).))))...(((.((((..(((((....))))..)..)))).))).............. (-16.23 = -16.12 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:32 2006