Locus 4250

Sequence ID 3L_DroMel_CAF1
Location 12,437,756 – 12,437,850
Length 94
Max. P 0.500000
window6576

overview

Window 6

Location 12,437,756 – 12,437,850
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 83.55
Mean single sequence MFE -32.00
Consensus MFE -21.08
Energy contribution -21.17
Covariance contribution 0.09
Combinations/Pair 1.35
Mean z-score -1.90
Structure conservation index 0.66
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12437756 94 - 23771897
UGCCCCUGUGCGGUGACCACUCGCCACAGGGUCCGCCACCUUCGGUGCUGUUACACCCACUGCAUGGUCCUCCGGGCGGCCACCAUCACCAUCA
...(((((((((((....)).)).))))))).(((((......((((......)))).......(((....))))))))............... ( -30.90)
>DroPse_CAF1 40930 94 - 1
UUCCCCUCUGCUCAGAGCACUCUCCGCAGGCACCACCCCCAUCCGUGAUACUGCACCCACUGCACGGACCACCUGGGGGCCACCAUCACCACCA
......(((((..(((....)))..))))).....((((((((((((.((.((....)).)))))))).....))))))............... ( -26.00)
>DroSec_CAF1 40612 94 - 1
UGCCCCUGUGCGGUGACCACUCGCCACAGGGACCGCCGCCUUCAGUGCUGUUGCACCCACUGCAUGGUCCUCCAGGCGGCCACCAUCAUCAUCA
...(((((((((((....)).)).)))))))...(((((((..((..((((.(((.....)))))))..))..))))))).............. ( -37.60)
>DroEre_CAF1 41597 94 - 1
UGCCGCUGUGCGGUGAUCACUCGCCACAGGCUCCGCCGCCUUCGGUGCUGUUGCAUCCACUGCAUGGUCCUCCGGGGGGCCACCAUCACCAUCA
....((.(((.((((...((.((((..((((......))))..))))..))..))))))).)).(((((((....)))))))............ ( -33.40)
>DroYak_CAF1 42969 94 - 1
UGCCCCUGUGCGGUGAUCACUCGCCACAGGCGCCGCCGCCAUCGGUGCUGUUGCAUCCACUGCAUGGUCCGCCUGGCGGCCACCAUCACCAUCA
.((.((((((((((....)).)).)))))).)).(((((((.(((.(((((.(((.....)))))))))))..))))))).............. ( -38.40)
>DroPer_CAF1 41382 94 - 1
UUCCCCUCUGCUCAGAGCACUCUCCGCAGGCACCACCUCCGUCCGUGAUACUGCACCCACUGCACGGGCCACCUGGGGGCCACCAUCACCACCA
.((((((((((..(((....)))..)))))..........(((((((.((.((....)).))))))))).....)))))............... ( -25.70)
>consensus
UGCCCCUGUGCGGUGACCACUCGCCACAGGCACCGCCGCCUUCGGUGCUGUUGCACCCACUGCAUGGUCCUCCUGGCGGCCACCAUCACCAUCA
....((((((..((((....))))))))))....(((((((...((((.............))))((....))))))))).............. (-21.08 = -21.17 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:45 2006