| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,435,139 – 12,435,243 |
| Length | 104 |
| Max. P | 0.779737 |
| Location | 12,435,139 – 12,435,243 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -20.04 |
| Energy contribution | -21.60 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12435139 104 - 23771897 UUGAUGGACCAGGGCAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCGCGCAGUCAAACAUUUUUACGAUGCAGCAUCUCAAGCUCGUAUAUCCAGCAACCUCGA- (((.((((...((((...(((((((((....)))))))))......(((((.((............))))).)).......)))).....)))).)))......- ( -32.50) >DroSec_CAF1 38027 102 - 1 UUGAUGGACCUGGGCAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCG--CAGUCAAACAUUUUUACGAUGCAGCAUCGCAAGCUCGUAUAUCCAGCAACCUCGA- ((((.((..(((((....(((((((((....))))))))).......--..............((((((((......)))...)))))..)))))...))))))- ( -32.00) >DroSim_CAF1 38761 102 - 1 UUGAUGGACCUGGGCAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCG--CAGUCAAACAUUUUUACGAUGCAGCAUCGCAAGCUCGUAUAUCCAGCAACCUCGA- ((((.((..(((((....(((((((((....))))))))).......--..............((((((((......)))...)))))..)))))...))))))- ( -32.00) >DroEre_CAF1 38944 102 - 1 UUGAUGGAGCAGGGCAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCG--CAGUCAAACAUUUUUACGAUGCAGCAUCCCAAGCUCGUAUAUCCAGCAACUCCGA- ....(((((..(((....(((((((((....)))))))))......(--((.((............))))).....)))..(((.(.....).)))..))))).- ( -32.10) >DroMoj_CAF1 33344 99 - 1 GCUCCGGGCCCUGACAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCG--CAGUCAAACAUUUUUACGAUCG-GCGUCGCAGUCACAGUCACCG---AAGCUGGAG (((.(((((..((((...(((((((((....))))))))).....((--(.(((............)))..-))).....))))..))..)))---.)))..... ( -33.00) >DroAna_CAF1 31476 88 - 1 UUGAUGGACCAGGGCAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCG--CAGGCAAACAUUUUUACGAUCCUGCGGCACUGACUC--------------CUCCC- ..((.(((.(((.((...(((((((((....))))))))).....((--((((................)))))))).)))..))--------------)))..- ( -34.09) >consensus UUGAUGGACCAGGGCAAAGUGGCGCUCUCAUGAGCGCCAUAUAAUCG__CAGUCAAACAUUUUUACGAUGCAGCAUCGCAAGCUCGUAUAUCCAGCAACCUCGA_ ....((((...((((...(((((((((....)))))))))..........................(((.....)))....)))).....))))........... (-20.04 = -21.60 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:41 2006