Locus 4240

Sequence ID 3L_DroMel_CAF1
Location 12,416,807 – 12,416,906
Length 99
Max. P 0.509177
window6564

overview

Window 4

Location 12,416,807 – 12,416,906
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 77.16
Mean single sequence MFE -27.08
Consensus MFE -11.38
Energy contribution -11.46
Covariance contribution 0.08
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.42
SVM decision value -0.05
SVM RNA-class probability 0.509177
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12416807 99 - 23771897
CUAUCUGCUGCCAUAAAAGCAGUAACAGCAACCUGGAUAAGAGCGGCUUUCACGA-GCCACUGC-ACAGUGGGACAGAUUCACAAUG-AAUCACAC-AAUUUA
..(((((.(.((((....(((((..(((....))).........(((((....))-))))))))-...)))).))))))........-........-...... ( -23.70)
>DroPse_CAF1 19415 99 - 1
CUAUCUGUUGCCAUAAAAGCAGCCACAGCAACGCGGAUAAAAGCAGCUUUCACGG-AA--CUCCAACCGUGGAA-AGAUGCGACAUUAAAGUGGUUAAAAAUC
....(((((........)))))((((.((...))........(((.(((((((((-..--......)))).)))-)).))).........))))......... ( -23.20)
>DroSim_CAF1 20032 100 - 1
CUAUCUGCUGCCAUAAAAGCAGCAACAGCAACCUGGAUAAGAGCGGCUUUCACGG-GCCACAGC-ACAGUGGGCCAAAUUCGCUAGG-AACAACAACAAAAUA
.((((((((((.......)))))).(((....)))))))..((((..(((...((-.((((...-...)))).)))))..))))...-............... ( -27.10)
>DroEre_CAF1 20449 100 - 1
CUAUCUGCUGCCAUAAAAGCAGCAACAGCAACCUGGAUAAAAGCGGCUUUCACGG-GCAGCUGC-ACAGUGGGCCAGAUUCGCCAGG-AGCCGCUUACAAAUA
.((((((((((.......)))))).(((....))))))).(((((((((((((..-((....))-...)))(((.......))).))-))))))))....... ( -35.30)
>DroYak_CAF1 21010 100 - 1
CUAUCUGCUGCCAUAAAAGCAGCAACAGCAACCUGGAUAAAAGCGGCUUUCACGG-GCAAGCGC-ACAGUGGGCCCAAUUCGCGAGG-AACCACAUAAAAAUA
.((((((((((.......)))))).(((....)))))))...(.((.......((-((..((..-...))..))))..(((....))-).)).)......... ( -27.00)
>DroAna_CAF1 15487 90 - 1
CUAUCUGCUGCCAUAAAAGCAGCAACAGCAACCUGGAUAAAAGCGGCUUUCACGCUGCCACAG--ACAGUGGGACAAGGUGGCA------CAAAGUAA-----
.....((((((.......))))))...((.((((.(.....((((.......)))).((((..--...))))..).)))).)).------........----- ( -26.20)
>consensus
CUAUCUGCUGCCAUAAAAGCAGCAACAGCAACCUGGAUAAAAGCGGCUUUCACGG_GCCACUGC_ACAGUGGGACAAAUUCGCAAGG_AACCACAUAAAAAUA
.((((((((((.......)))))).(((....))))))).........(((((...............))))).............................. (-11.38 = -11.46 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:34 2006