| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,380,252 – 12,380,349 |
| Length | 97 |
| Max. P | 0.655557 |
| Location | 12,380,252 – 12,380,349 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -17.36 |
| Energy contribution | -17.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12380252 97 - 23771897 UUAUAUUUGGCAUCAUUA-------CCAGAGGCUAGAACUCGCAUUCCGCGAAGAGACUUCUCGAAAUUGUCAC----CGUGUGUGAAUGUGACAGACACGCCGAAUG ...((((((((.......-------(.(((((((.....((((.....))))..)).))))).)...(((((((----.((......)))))))))....)))))))) ( -26.30) >DroSec_CAF1 6659 97 - 1 UUAAAUUUGGCAUCAUUA-------CCAGAGGUUAGAACUCGCAUUCCGCGA---GACUUCUCGAAAUUGUCACC-ACCGUGUGUGAAUGUGACAGACACGCCGAAUG ....(((((((.......-------(.((((((.....(((((.....))))---))))))).)...((((((((-((.....)))...)))))))....))))))). ( -29.40) >DroSim_CAF1 6614 101 - 1 UUAAAUUUGGCAUCAUUA-------CCAGAGGUUAGAACUCGCAUUCCGCGAGGAGACUUCUCGAAAUUGUCACCCUCCGUGUGUGAAUGUGACAGACACGCCGAAUG ....(((((((.......-------(.(((((((....(((((.....)))))..))))))).)...(((((((..(((....).))..)))))))....))))))). ( -31.80) >DroEre_CAF1 6600 101 - 1 UUCUUUAUGCCAUCAUUAUUUGCCACCAGAGGUUAA-ACUCACAUUCCGCGAAGAGUCUUCUCGAAAUUGUCCC------CGUGUGAAUGUGACAAACACGCAGAAUG .......(((...........(((......)))...-..((((((((((((..(((....)))((.....))..------)))).)))))))).......)))..... ( -20.70) >DroYak_CAF1 6655 101 - 1 CCCUUU-UGGCAUCAUUAUUUUCCGCCAGAGGUUAAAAUUCACAUUCUGCGAAGAGAUUGCUCGAAAUUGUCAC------UGUGUGAAUGUGACAAACACGCAGAAUG ..((((-((((.............))))))))..........(((((((((..(((....)))....(((((((------.........)))))))...))))))))) ( -33.22) >consensus UUAUAUUUGGCAUCAUUA_______CCAGAGGUUAGAACUCGCAUUCCGCGAAGAGACUUCUCGAAAUUGUCAC____CGUGUGUGAAUGUGACAGACACGCCGAAUG ............................(((.......))).(((((.(((..(((....)))....(((((((...............)))))))...))).))))) (-17.36 = -17.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006