Locus 4203

Sequence ID 3L_DroMel_CAF1
Location 12,283,314 – 12,283,407
Length 93
Max. P 0.957601
window6515

overview

Window 5

Location 12,283,314 – 12,283,407
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 83.21
Mean single sequence MFE -17.28
Consensus MFE -15.65
Energy contribution -15.18
Covariance contribution -0.47
Combinations/Pair 1.24
Mean z-score -2.28
Structure conservation index 0.91
SVM decision value 1.48
SVM RNA-class probability 0.957601
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12283314 93 - 23771897
CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUUC---UUUCUUUC-UUCAUCU
..((((((.......(((((....))))).((..((((.((((......))))))))...))))))))..........---........-....... ( -16.30)
>DroGri_CAF1 20190 94 - 1
CUGCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUCCUUGCGCUUGACUGCGCCACCCA--UCCCAUA-CCCAUUU
..(((((...(((((.......)))))))))).....((((((......)))))).....((((......))))......--.......-....... ( -13.10)
>DroSec_CAF1 18362 96 - 1
CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUUUCUUUUUUUUUC-UUCAGCU
.....(((...((((((.............((..((((.((((......))))))))...))((......))............)))))-)...))) ( -16.80)
>DroEre_CAF1 18399 94 - 1
CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUUCCU--CUACUUC-UUCCUCU
..((((((.......(((((....))))).((..((((.((((......))))))))...))))))))............--.......-....... ( -16.30)
>DroWil_CAF1 29794 97 - 1
CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUCGACUGCUCCACGUUGUUGCAUUCAUUCGGUU
..((((((.......(((((....))))).((..((((.((((......))))))))...)))))))).(((..(.....)..)))........... ( -20.20)
>DroAna_CAF1 15408 96 - 1
CUUGGGGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACGAUUUUUCUUGUAGUGUUUGCGCUUCGCUGCAUAUCGCUUCCAGUAUC-AGCAUGU
...(((((.......(((((....))))).((..((((.((((......))))))))...)))))))((((.((((........)))))-))).... ( -21.00)
>consensus
CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUCCCU_UUUCUUUC_UUCAUCU
..((((((.......(((((....))))).((..((((.((((......))))))))...))))))))............................. (-15.65 = -15.18 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:43 2006