Locus 42

Sequence ID 3L_DroMel_CAF1
Location 172,032 – 172,152
Length 120
Max. P 0.629752
window50

overview

Window 0

Location 172,032 – 172,152
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.64
Mean single sequence MFE -38.20
Consensus MFE -34.10
Energy contribution -33.73
Covariance contribution -0.37
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.89
SVM decision value 0.20
SVM RNA-class probability 0.629752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 172032 120 - 23771897
GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGGCUUACUUCCAUUGAAAAAAGACUGUGAGGUUAGAUGAUAAUCGGAGAACGCGAAAACGUCGCAUGUAAGCGUAUCCUGUAACUUC
..((((((((((((.(.((((.........)))))))).)))))))))............((((((((((....)))(((..((((....((((...))))..)))).)))..))))))) ( -36.00)
>DroSec_CAF1 5738 120 - 1
GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGCUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAAAAUGUCGCAUGUAAGCGUAUCCUGUAACUUC
..(((((((((..((.(((((.........)))))))..)))))))))............((((((((((....)))(((..((((....(((...)))....)))).)))..))))))) ( -39.10)
>DroSim_CAF1 5916 120 - 1
GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGCUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAAAAUGUCGCAUGUAAGCGUAUCCUGUAACUUC
..(((((((((..((.(((((.........)))))))..)))))))))............((((((((((....)))(((..((((....(((...)))....)))).)))..))))))) ( -39.10)
>DroYak_CAF1 5947 120 - 1
GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGGUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAGAACGUCGCAUGUAAGCGUAUCCUGUAACUUC
..(((((((((..(((.((((.........)))))))..)))))))))............((((((((((....)))(((..((((....((((...))))..)))).)))..))))))) ( -38.60)
>consensus
GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGCUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAAAACGUCGCAUGUAAGCGUAUCCUGUAACUUC
(((.(((........)))))).((((((...(((.(((((((((..........((((....)))).(((....)))))))...((((.....))))..)))))))).))))))...... (-34.10 = -33.73 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:34 2006