Locus 4189

Sequence ID 3L_DroMel_CAF1
Location 12,241,254 – 12,241,344
Length 90
Max. P 0.679437
window6495

overview

Window 5

Location 12,241,254 – 12,241,344
Length 90
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 70.33
Mean single sequence MFE -14.88
Consensus MFE -8.06
Energy contribution -8.62
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -1.65
Structure conservation index 0.54
SVM decision value 0.30
SVM RNA-class probability 0.679437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12241254 90 + 23771897
AAAACA----GAAAGAUCGUUAAUGAGGAAUAUGAAAGUGUUUUUACUAAAUACAACUUUACCAGAAUCUUUGGCAUAAAGCCAAAAUAAUACU------------
......----.((((...((.....((((((((....)))))))).......))..)))).........((((((.....))))))........------------ ( -12.30)
>DroSec_CAF1 55360 94 + 1
AAAAAAUUACGAAAGUACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAUUACAACUUUAGCAAAAUCUUUGGCAUAAAGCCAAAAUAAUACA------------
.......(((....))).(((((((((.((((......)))))))))))))..................((((((.....))))))........------------ ( -16.50)
>DroSim_CAF1 57584 94 + 1
AAAAAAUUACGAAAGAACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAAAACAACUUUACCAAAAUCUUUGGCAUAAAGCCAAAAUAAUACA------------
.........(....).......(((.......((((((((((((.....))))).))))).))......((((((.....))))))....))).------------ ( -17.00)
>DroYak_CAF1 56309 102 + 1
ACGAAAUUAAAAAG----CAAAUUGAGCAAUAUAAAAUUGUUCUUAAGGCAUAUAAGCUUAGUAACAUCUCUUACAUAAAGUUAAAAUCAUGAAUGAUGCAAUUCU
..(((........(----(.....(((((((.....))))))).....))......((...((((......))))...........((((....))))))..))). ( -13.70)
>consensus
AAAAAAUUACGAAAGAACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAAUACAACUUUACCAAAAUCUUUGGCAUAAAGCCAAAAUAAUACA____________
...........((((....((((((((.((((......))))))))))))......)))).........((((((.....)))))).................... ( -8.06 =  -8.62 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006