Locus 4187

Sequence ID 3L_DroMel_CAF1
Location 12,233,114 – 12,233,212
Length 98
Max. P 0.901948
window6493

overview

Window 3

Location 12,233,114 – 12,233,212
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 91.58
Mean single sequence MFE -25.50
Consensus MFE -19.40
Energy contribution -19.06
Covariance contribution -0.34
Combinations/Pair 1.12
Mean z-score -2.25
Structure conservation index 0.76
SVM decision value 1.02
SVM RNA-class probability 0.901948
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12233114 98 - 23771897
UUAAAUUCGAGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAACUGACUCCUGUCGCUCUAUGAUAUGUGCAUAUGCAUUUAUU
.........(((((...(((.(((.(((.....)))..(((.......)))))).))).(((....))))))))..((((.((((....)))).)))) ( -23.20)
>DroSec_CAF1 47171 98 - 1
UUAAAUUCGUGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAAGUGACUCCUGUCGCUCAAUGAUAUGUGCAUAUGCAUUUAUU
.(((((.((((.((((.(((((((..(((....((((((((((.......)))))..)))))...))).))))))).....)))).)))).))))).. ( -27.50)
>DroSim_CAF1 49338 98 - 1
UUAAAUUCGUGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAAGUGACUCCUGUCGCUCAAUGAUAUGUGCAUAUGCAUUUAUU
.(((((.((((.((((.(((((((..(((....((((((((((.......)))))..)))))...))).))))))).....)))).)))).))))).. ( -27.50)
>DroEre_CAF1 48712 92 - 1
UUAAAUUCUAGUGCAUUGUUGAGCAAACAUUUUGCUACCAGCUGUCUCCCGGCUGAAGUGACUCCUGUCGCACAAUGAUAUGUG------CAUUUAUU
..........(..(((.(((((((((.....)))))..((((((.....))))))..(((((....))))).))))...)))..------)....... ( -26.10)
>DroYak_CAF1 48085 92 - 1
UUAAAUUCGAGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUUCUGGCUAAAGUGACUGCUGUCGCUCAAUGAUAUGUG------CAUUUAUU
............((((.(((((((.(((.....)))..((((.(((..((......)).))).))))..))))))).....)))------)....... ( -23.20)
>consensus
UUAAAUUCGAGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAAGUGACUCCUGUCGCUCAAUGAUAUGUGCAUAUGCAUUUAUU
..........((((.......(((((.....)))))..((((((.....))))))....(((....)))))))...((((.((((....)))).)))) (-19.40 = -19.06 +  -0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:21 2006