Locus 4183

Sequence ID 3L_DroMel_CAF1
Location 12,216,930 – 12,217,024
Length 94
Max. P 0.546331
window6489

overview

Window 9

Location 12,216,930 – 12,217,024
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 84.72
Mean single sequence MFE -12.17
Consensus MFE -11.33
Energy contribution -11.50
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.93
SVM decision value 0.03
SVM RNA-class probability 0.546331
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12216930 94 + 23771897
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACACUUCUCGU-UCUU---UUUUUGCAAUCCGUUUUUCUUCUUUUGGU--C
.((((((...........))))))....(((((((.....))))).))............-....---.............................--. ( -12.30)
>DroSec_CAF1 31251 89 + 1
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACA------UUUUUUU---UUUUUGCAAUCCGUUUUUCUUCUUUUGGC--C
.((((((...........))))))....(((((((.....))))).))....------.......---.............................--. ( -12.30)
>DroSim_CAF1 31777 95 + 1
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACUCUCCUCUUUUUUU---UUUUUGCAAUUCGUUUUUCUUCUUUUGGC--C
.((((((...........))))))....(((((((.....))))).)).................---.............................--. ( -12.30)
>DroEre_CAF1 32210 88 + 1
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCAUCUAGACGUCGCUACUCUUUUUUU----------UUUGCAAUCCGUUCUUCUUCUUUUGGU--C
.((((((...........))))))....(((((((.....))))).))............----------...........................--. ( -12.10)
>DroYak_CAF1 31437 98 + 1
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACACUUUUUUUUUUCUUCGUUUUUGCAAUCCGUUUUUCUUCUUUUGGU--C
.((((((...........))))))....(((((((.....))))).)).................................................--. ( -12.30)
>DroAna_CAF1 26863 95 + 1
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACAUCGCUACUUUGCUCCU-U-UC---CUCAUCCAUUCCGUUUUUGUCUUUUUUGUCCC
....................(((((((.((..(((.....)))...))...)))))))..-.-..---................................ ( -11.70)
>consensus
AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACACUUCUCUU_UUUU___UUUUUGCAAUCCGUUUUUCUUCUUUUGGU__C
.((((((...........))))))....(((((((.....))))).)).................................................... (-11.33 = -11.50 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:17 2006