Locus 4179

Sequence ID 3L_DroMel_CAF1
Location 12,204,017 – 12,204,116
Length 99
Max. P 0.648178
window6483

overview

Window 3

Location 12,204,017 – 12,204,116
Length 99
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 76.74
Mean single sequence MFE -17.88
Consensus MFE -11.00
Energy contribution -11.40
Covariance contribution 0.40
Combinations/Pair 1.15
Mean z-score -1.65
Structure conservation index 0.62
SVM decision value 0.24
SVM RNA-class probability 0.648178
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12204017 99 - 23771897
GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUU--------UUUUUGCAGAAAAAUGCAGAGAGGAAAAUAGUUAUUGGAAUUAUAUUUUUUUUA
(((((.....)))))...............(((...(((((((((--------((((((((......)))))))))))))))))....)))................ ( -25.10)
>DroSec_CAF1 18381 85 - 1
GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUUUA------AUUUUGCAGAAAAAUGCAGAGAGAAAUAUA---------------U-UUGUUUG
(((((.....)))))......................((((((((..------..((((((......))))))))))))))..---------------.-....... ( -14.80)
>DroSim_CAF1 18759 85 - 1
GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUUAA------UUUUUGCAGAAAAAUGCAGAGAGAAAUAUA---------------U-UUGUUUG
(((((.....)))))......................((((((((..------..((((((......))))))))))))))..---------------.-....... ( -14.80)
>DroEre_CAF1 18870 106 - 1
GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUUUCCUUUUUUUUAUGUAGAAAAAUGCAGAGAGGAAAAUAGUAAUGGGAAUCAUAU-UUAUUUA
(((((.....)))))..............((((...(((((((((((((.((((((.....))))))...)).)))))))))))...))))........-....... ( -22.40)
>DroYak_CAF1 18699 93 - 1
GCUUGUUCUACAAGUAACUUCAACCUUACCCCACCU-------------UUUUUUAAUGUAGAAAAAUGCAGAGAGGAAAAUAGUAAUUGGAAUUAUAU-UUACUUA
(((((.....)))))...(((((..((((....(((-------------(((.....((((......))))))))))......))))))))).......-....... ( -12.30)
>consensus
GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUU________UUUUUGCAGAAAAAUGCAGAGAGGAAAAUAGU_AU_GGAAU_AUAU_UUAUUUA
(((((.....)))))......................................((((((((......))))))))................................ (-11.00 = -11.40 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:12 2006