Locus 4169

Sequence ID 3L_DroMel_CAF1
Location 12,174,510 – 12,174,615
Length 105
Max. P 0.585588
window6468

overview

Window 8

Location 12,174,510 – 12,174,615
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.21
Mean single sequence MFE -29.43
Consensus MFE -17.82
Energy contribution -18.73
Covariance contribution 0.92
Combinations/Pair 1.18
Mean z-score -1.80
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.585588
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12174510 105 + 23771897
CUUCUUCUUCAGCACACAGUCAAUGGCCUGGACGACUUCCAGAAAGAUGUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAUUAAAACGAAAGAGUUGCUAAUUA
..........(((((((((((((((((.((((((((.((......)).)))))))).)))..((...))))))).))))).......(....)...))))..... ( -34.00)
>DroPse_CAF1 9448 102 + 1
CUUCUUCUUGAGCACACAAUCGAUGGCCUGAACAACCUCCUGGAAGAUGUCAUCGACAUCACGCUCGGCAUUGAUCUGUGGAUAG-GCGAA--AGUUAUUCAAUA
.......(((((..(((((((((((.((.((.(..((....))..((((((...))))))..).))))))))))).))))....(-((...--.))).))))).. ( -27.60)
>DroSec_CAF1 7779 105 + 1
CUUCUUCUUCAGCACACAGUCAAUGGCCUGGACGACUUCCAGAAAGAUGUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAUUAAAACGAAAGAGUUGCUAAUUA
..........(((((((((((((((((.((((((((.((......)).)))))))).)))..((...))))))).))))).......(....)...))))..... ( -34.00)
>DroEre_CAF1 8758 104 + 1
CUUUUUCUUCAGCACACAGUCAAUGGCCUGGACGACUUCCAGAAAGAUAUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAUUAAAAUUGAACAG-UGCUAAUUA
..........(((((((((((((((((.(((((((..((......))..))))))).)))..((...))))))).))))..(((....)))...)-))))..... ( -28.60)
>DroAna_CAF1 16421 100 + 1
CUUCUUCUUCAGCACGCAGUCGAUGGCCUGGCAGACCUCCAAGAAGAUGUCGUCCACGUCGCGCUCGGCGUUGAUCUGUUCAU----GGGAAUACUUGAGAAUA-
.(((((..(((((.((.((.((.((((.(((..(((.((......)).)))..))).))))))))))..)))))..(((((..----..)))))...)))))..- ( -24.80)
>DroPer_CAF1 15893 102 + 1
CUUCUUCUUGAGCACACAAUCGAUGGCCUGAACAACCUCCUGGAAGAUGUCAUCGACAUCACGCUCGGCAUUGAUCUGUGGAUAG-GCGAA--AGUUAUUCAAUA
.......(((((..(((((((((((.((.((.(..((....))..((((((...))))))..).))))))))))).))))....(-((...--.))).))))).. ( -27.60)
>consensus
CUUCUUCUUCAGCACACAGUCAAUGGCCUGGACGACCUCCAGAAAGAUGUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAAUAA_ACGAAA_AGUUGCUAAUUA
..............(((((((((((.((((((.....)))))...(((((.....)))))......).)))))).)))))......................... (-17.82 = -18.73 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:57 2006