Locus 4150

Sequence ID 3L_DroMel_CAF1
Location 12,124,133 – 12,124,240
Length 107
Max. P 0.662607
window6446

overview

Window 6

Location 12,124,133 – 12,124,240
Length 107
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 82.03
Mean single sequence MFE -27.42
Consensus MFE -19.76
Energy contribution -20.33
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.662607
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12124133 107 - 23771897
---GCUAUUUUUAGGAGCUACGUUUGCUUGGCUUAGAUUCCUUAUAGUUCCUAUACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACUU
---((((((..(((((((((......((......))........)))))))))............(((...(((((((.....)))))))..)))))))))......... ( -28.14)
>DroSec_CAF1 1377 107 - 1
---GAUGUUUUUAGAAGCUACGUUUGCUUGGCUUAGUUUCCUUAUAUCUCUUAAACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACAU
---(((((((...(((((((.(((.....))).)))))))............))))))).((((((((((((((((((.....)))))))...)))..))).)))))... ( -28.96)
>DroSim_CAF1 1371 92 - 1
---GAUGUUUUUAGAAGCU---------------AGUUUCCUUAUAUCUCUUAAACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACAU
---(((((((..(((....---------------((....))....)))...))))))).((((((((((((((((((.....)))))))...)))..))).)))))... ( -24.00)
>DroYak_CAF1 1436 110 - 1
AGCGCCGUUUCUAAGAACUACGUUAGCUUGGCUUAGAUUCCACAUAGUUCUUAUACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGGCAAUCACUU
...(((((...(((((((((.((...((......)).....)).))))))))).)).........(((...(((((((.....)))))))..)))....)))........ ( -28.60)
>consensus
___GAUGUUUUUAGAAGCUACGUUUGCUUGGCUUAGAUUCCUUAUAGCUCUUAAACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACAU
...(((((.....(((((((.(((.....))).)))))))...)))))............((((((((((((((((((.....)))))))...)))..))).)))))... (-19.76 = -20.33 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:35 2006