Locus 415

Sequence ID 3L_DroMel_CAF1
Location 1,202,954 – 1,203,062
Length 108
Max. P 0.529994
window610

overview

Window 0

Location 1,202,954 – 1,203,062
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.38
Mean single sequence MFE -32.45
Consensus MFE -23.52
Energy contribution -24.27
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.529994
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1202954 108 - 23771897
CCCAAGUGGUAAUCCAGAUGAUUAAUCACACUUUCGGCCGGCCAUAAAACC---AGAGCACGACCGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUGAAAC---------C
((((((((.(((((.....)))))....)))))((((((((........))---.).)).)))..)))(((.(((((((.((......)).)))))))..))).......---------. ( -31.10)
>DroAna_CAF1 32070 116 - 1
CCCAAGUUGUAAUCCAGAUGAUUAAUCACACUCUCGG----CCAUAAAACCCAGAGACCACAACUGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAAGCCCCGGCUUC
((((.(((((......(((.....)))...((((.((----........)).))))...)))))))))(((.(((((((.((......)).)))))))..)))....((((....)))). ( -37.00)
>DroEre_CAF1 17322 107 - 1
CCCAAGUGGCAAUCCGGAUGAUUAAUCACUCUUUCGGCCGGCCAUAA-ACC---AGACCACGACCGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAGC---------C
(((..(((((...(((((.((........)).)))))...)))))..-...---.(........))))(((.(((((((.((......)).)))))))..))).......---------. ( -32.10)
>DroYak_CAF1 19496 107 - 1
CCCAAGUGGUAAUCCAAAUGAUUAAUCACACUUUCGGCUGGCCAUAA-ACC---AGACCACGACCGCGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAAC---------C
.....(((((((((.....))))............((((((......-.))---)).))...))))).(((.(((((((.((......)).)))))))..))).......---------. ( -29.60)
>consensus
CCCAAGUGGUAAUCCAGAUGAUUAAUCACACUUUCGGCCGGCCAUAA_ACC___AGACCACGACCGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAAC_________C
(((..(((((((((.....)))).)))))......((....))......................)))(((.(((((((.((......)).)))))))..)))................. (-23.52 = -24.27 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:20 2006