| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,121,959 – 12,122,051 |
| Length | 92 |
| Max. P | 0.628755 |
| Location | 12,121,959 – 12,122,051 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 78.43 |
| Mean single sequence MFE | -31.69 |
| Consensus MFE | -17.12 |
| Energy contribution | -18.80 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12121959 92 + 23771897 UAAGAAAAUGCCAGUGUGCUGUUUGCCUAGGAGGAGCUACUGCUGCACCCAUUGUAAACAAUU---UCUUGGGGGUUGCGGCAG-ACAGGGGCAAC ........((((.((.((((((.(.((((((((.(((....))).)....((((....)))).---))))))).)..)))))).-))...)))).. ( -32.70) >DroVir_CAF1 3827 82 + 1 --UGUUGUCGCCGUGGCGCUGUUUGAACAGGAG---------CUGCACCCACAA-AGGCGUCGCCACCUUGGGGGUUGCCGGAGA--CGAGACAAU --.((((((((((..((.((((....))))..)---------)..).((((...-.(((...)))....)))))))...((....--)).)))))) ( -31.00) >DroSec_CAF1 4248 89 + 1 UAGGAAAAUGCCAGUGUGCUGUUUGCCUAGGAGGAGCUACUGCUGCACCCAUUGUAAACAAUU---CCUUGGGGUUUGCAGCAG-ACAGGGG---A ........(.((.((.((((((..(((((((((.(((....))).)....((((....)))))---)))..))))..)))))).-)).)).)---. ( -30.40) >DroSim_CAF1 4242 92 + 1 UAGGAAAAUGCCAGUGUGCUGUUUGCCUAGGAGGAGCUACUGCUGCACCCAUUGUAAACAAUU---CCUUGGGGGUUGCAGCAG-ACAGGGGCAAU ........((((.((.((((((..((((..(((((((....))((((.....))))......)---))))..)))).)))))).-))...)))).. ( -33.50) >DroEre_CAF1 4363 92 + 1 UAAGAAAAUGCCAGUGUGCUGUUUGCCUAGGAGGAGCUCCGGCUGCACCCAUAAUAAACAAUU---CCGUGGGGGUUGCUGCAG-ACAGGGGCAAU ........((((......((((((((...((((...))))(((.((.(((((...........---..))))).)).)))))))-)))).)))).. ( -30.42) >DroYak_CAF1 4174 92 + 1 UAAGAAAAUGCCAGUGUGCUGUUUGCCUAGGAGGAGCUCCGGCUGCACCCAUUAUAAACAACU---CCGUGGGGGUUGCAGCAG-ACAGGGGCAAU ........((((.((.((((((..(((.....(.(((....))).).(((((...........---..)))))))).)))))).-))...)))).. ( -32.12) >consensus UAAGAAAAUGCCAGUGUGCUGUUUGCCUAGGAGGAGCUACUGCUGCACCCAUUAUAAACAAUU___CCUUGGGGGUUGCAGCAG_ACAGGGGCAAU .........(((..(((.(((((.(((.....(.(((....))).).((((..................)))))))...))))).)))..)))... (-17.12 = -18.80 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:34 2006