Locus 4147

Sequence ID 3L_DroMel_CAF1
Location 12,112,242 – 12,112,348
Length 106
Max. P 0.571094
window6442

overview

Window 2

Location 12,112,242 – 12,112,348
Length 106
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 75.28
Mean single sequence MFE -41.65
Consensus MFE -25.44
Energy contribution -26.30
Covariance contribution 0.86
Combinations/Pair 1.29
Mean z-score -1.31
Structure conservation index 0.61
SVM decision value 0.07
SVM RNA-class probability 0.571094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12112242 106 - 23771897
AUGGUCGGUUGGAGCCGUUUGCUGUCGCCGGCGGCGAAGUUCGCCAGCUACCGGGCUGUCCUGCAAGAGCCCGCGUGCCGGAAUGGUGAGCAUUUCUUGAAA------AUAU-
((..(((((....)))(((..((((..(((((((((.....))))....((((((((.(......).)))))).))))))).))))..))).......))..------))..- ( -41.80)
>DroPse_CAF1 8264 105 - 1
AUGGUCGGUUGGAGCCGUUUGCUGUCGCCAGCGGCGCAAUUCGCCAACUACCGCGCCGUUCUGCAAGCGCCGGCUUGCCGGAAUGGUAAGUAGAGCUUAGA-------UCAG-
.((((..((((..((((((.((....)).)))))).))))..)))).((((...((((((((((((((....))))).)))))))))..))))........-------....- ( -45.10)
>DroEre_CAF1 6097 105 - 1
AUGGUCGGUUGGAGCCGUUUGCUUUCGCCGGCGGCGAAGUUCGCCAGUUACCGGGCUGUCCUGCAGGAGCCCGCUUGCCGGAAUGGUGAGCACUCCUUGGA-------UUAU-
((((((.(..((((..(((..((....(((((((((.....))))......(((((..(((....))))))))...)))))...))..))).)))).).))-------))))- ( -47.20)
>DroMoj_CAF1 6058 113 - 1
AUGGUUGGUUGGAGCCGUUUGCUGCUGCCAGCGGCACAAUUCGCCAAGAAUAGGGCUGUACUGCUGACACCAGCCACAAGGAAUGGUAAGCACAACUGCUAAUGCAUCAGAUG
.((((..((((..((((((.((....)).)))))).))))..)))).......(((.((..((((...((((.((....))..)))).))))..)).)))............. ( -35.70)
>DroAna_CAF1 5934 103 - 1
AUGGUCGGUUGGAGCCGUAUGCUGUCGCCGGCGGCAUCUUUCGCGAAGUACCGCGCCGUGCUUCAGACACCUGCCUGCCGAAAUGGUAAGUAUCGCCAGUAA------A----
.(((.((((....(((((..((....))((((((((....((..(((((((......))))))).))....)))).))))..)))))....)))))))....------.---- ( -35.00)
>DroPer_CAF1 6135 105 - 1
AUGGUCGGUUGGAGCCGUUUGCUGUCGCCAGCGGCGCAAUUCGCCAACUACCGCGCCGUUCUGCAAGCGCCGGCUUGCCGGAAUGGUAAGUAGAGCUUAGA-------UCAG-
.((((..((((..((((((.((....)).)))))).))))..)))).((((...((((((((((((((....))))).)))))))))..))))........-------....- ( -45.10)
>consensus
AUGGUCGGUUGGAGCCGUUUGCUGUCGCCAGCGGCGCAAUUCGCCAACUACCGCGCCGUCCUGCAAGCGCCCGCUUGCCGGAAUGGUAAGCACAGCUUGGA_______ACAU_
.(((.(((.....((((((.((....)).)))))).....))))))..(((((..(((....((((((....)))))))))..)))))......................... (-25.44 = -26.30 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:31 2006