| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,103,002 – 12,103,118 |
| Length | 116 |
| Max. P | 0.846561 |
| Location | 12,103,002 – 12,103,118 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -34.45 |
| Consensus MFE | -20.06 |
| Energy contribution | -19.62 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12103002 116 - 23771897 UCAUUAUCUAAAUUCAAGAGUGAGCCACUAGAAACUGGUGGUUAGGUGAAGCAGCUGGAAGAUCCAGUUAAGAUUU---CCUCGCUCCAGAGACACCUUCUCCAGCUGUCUAAAUAGGA- ......((((..((((......(((((((((...)))))))))...))))((((((((((((((.......)))))---.(((......)))........))))))))).....)))).- ( -33.40) >DroSec_CAF1 4125 116 - 1 UCAUUAUCUAAAUUCAAGAGUGAGCCACUAUAAACUGGUGGCUAGCUGCAGCAGCUGGAAGAUCCAGUUCAUAUUU---CCUCGCUCCAGUGACACCUUCUCCAGCUGUCCAAAUAGGU- .....(((((........(((.((((((((.....)))))))).)))...(((((((((.((......))......---..((((....)))).......))))))))).....)))))- ( -34.60) >DroSim_CAF1 3506 115 - 1 UCAUUAUCUAAAUUCAAGAGUGAGCCACUAGAAACUGGUGGUUAGCUGCAGCAGCUGGAAGAUCCAGUUCAGAUUU---CCUCGCUCCAGAGACAC-UUCUACAGCUGUCCAAAUAGGU- .....(((((........(((.(((((((((...))))))))).)))(((((((((((.....)))))).(((...---.(((......)))....-.)))...))))).....)))))- ( -33.30) >DroYak_CAF1 3633 118 - 1 --AUUAUCUAAACGCAAGAGUACGCCACUGGGAACUGGCUAUUAGCUGCAGCAGCUGGAGGAUCCACAUACGCCUCCAGCUGCGCUCCAUAGGCACCCCCUCCACCUGUCCAAAUAUCAC --..........(....).....(((..((((....(((.....)))((.(((((((((((...........)))))))))))))))))..))).......................... ( -36.50) >consensus UCAUUAUCUAAAUUCAAGAGUGAGCCACUAGAAACUGGUGGUUAGCUGCAGCAGCUGGAAGAUCCAGUUAAGAUUU___CCUCGCUCCAGAGACACCUUCUCCAGCUGUCCAAAUAGGA_ .................(((((((.....(((((((((...(((((((...))))))).....))))))....)))....)))))))....((((...........)))).......... (-20.06 = -19.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:20 2006