Locus 41

Sequence ID 3L_DroMel_CAF1
Location 171,752 – 171,872
Length 120
Max. P 0.936132
window49

overview

Window 9

Location 171,752 – 171,872
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.06
Mean single sequence MFE -27.98
Consensus MFE -26.55
Energy contribution -27.55
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.95
SVM decision value 1.25
SVM RNA-class probability 0.936132
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 171752 120 + 23771897
GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAGAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUACAGACAG
...............((((((..(((((((((((((.....)))))))).............(((((((((........)))))))))...)))))....)))))).............. ( -27.60)
>DroSec_CAF1 5458 120 + 1
GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAUAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUAGAGACAG
.................(((((((.((.((((((((.....))))))))..........(((.((((.(((........)))...(((....)))..))))....))).)).))))))). ( -27.30)
>DroSim_CAF1 5636 120 + 1
GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAUAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUAGAGACAG
.................(((((((.((.((((((((.....))))))))..........(((.((((.(((........)))...(((....)))..))))....))).)).))))))). ( -27.30)
>DroYak_CAF1 5667 120 + 1
GUACAAUUUAUAUUUUUUGUUUAUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUUUAUAGGUGUGUAGAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUACAGACAG
...............((((((.((((((((((((((.....)))))))).............(((((((((........)))))))))...))))))...)))))).............. ( -29.70)
>consensus
GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAGAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUACAGACAG
.................(((((((((((((((((((.....)))))))).............(((((((((........)))))))))...)))))....(((......))).)))))). (-26.55 = -27.55 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:32 2006