Locus 4097

Sequence ID 3L_DroMel_CAF1
Location 11,952,149 – 11,952,269
Length 120
Max. P 0.626531
window6373

overview

Window 3

Location 11,952,149 – 11,952,269
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -41.44
Consensus MFE -22.82
Energy contribution -23.94
Covariance contribution 1.12
Combinations/Pair 1.36
Mean z-score -1.96
Structure conservation index 0.55
SVM decision value 0.19
SVM RNA-class probability 0.626531
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11952149 120 + 23771897
UCAGCAACUGGUCAGUGCUCCACUACCGUAGAGUGCUCCGCCAAAAACUGCGCAACCGCCAGUGAUGGCACCACCUACCCUGUCGCUGGAGAAACUGGCCAGUUCUACGUCUGCCUCAGC
..((.(((((((((((.((((((.((.((((.(((....((((...((((.((....))))))..))))..)))))))...)).).)))))..))))))))))))).............. ( -44.20)
>DroSec_CAF1 5009 120 + 1
UCAGCAACUGGUCAGUGCUCCACGACCGUGGAGUGCUCAGCCAAAAACUGUGCAACCGCCAGUGAGGACACCACUUUCCCUGUCGCCGGAGAAAGUGGCCAAUUCUACGUCUGCCUCAAC
........((((.((..((((((....))))))..))..))))...((((.((....))))))((((.((((((((((.(((....))).)))))))).............))))))... ( -43.81)
>DroSim_CAF1 4977 120 + 1
UCAGCAACUGGUCAGUGCUCCACGACCGUGGAGUGCUCAGCCAAAAACUGUGCAACCGCCAGUGAGGGCACCACCUACCCCGUCGCCGGAGAAAGUGGCCAAUUCUACGUCUGCCUCAAC
...(((.(((((.((..((((((....))))))..))..(((....((((.((....))))))...)))...............))))).....((((......))))...)))...... ( -38.80)
>DroEre_CAF1 5443 120 + 1
UCAGCAACCGGCCAGUGCUCCACUACCGUGGAGUGCUCCGCCAAAAAGUGCGCCACCGCCAGUGAUGGAACCACCUACCCAGUCGCCGGAGAAGAUGGCCAGUUUUACGUCUGCCUUGAC
((((((..((((.((..((((((....))))))..))..))).((((.((.((((.(.((.(((((((..........))).)))).))....).)))))).))))..)..)))..))). ( -42.40)
>DroYak_CAF1 3151 120 + 1
UCAGCCACUGGUCAGUGCUCCACUACUGUGGAGUGCUCUGCCAAAAAUUGCGCCACCGCCAGUGAUGGCACCACCUACGCUAUUGCCGGAGAAACUGGCCAAUUUUACGUCUGCCUAAAC
.(((.(..((((.((..((((((....))))))..))..))))(((((((.((((...((.(..(((((.........)))))..).))......)))))))))))..).)))....... ( -43.40)
>DroAna_CAF1 4911 120 + 1
GCUGAGACCGCCCAGUGCUCAUCCACAGUGCAAUGUUCUGCUGAGCUAUGCGCUAGCGCUGCUGAUGGUACCACAUAUCCCGUGGAAGGUGACACCAGCAAGUUCUAUGUCUGCAACAAC
((..((((....(((((((.......((((((..((((....))))..))))))))))))).((.((((.((((.......))))..(....))))).))........))))))...... ( -36.01)
>consensus
UCAGCAACUGGUCAGUGCUCCACUACCGUGGAGUGCUCAGCCAAAAACUGCGCAACCGCCAGUGAUGGCACCACCUACCCUGUCGCCGGAGAAACUGGCCAAUUCUACGUCUGCCUCAAC
.......(((((.((((((((((....))))))))))..((((...((((.((....))))))..))))...............))))).......(((.............)))..... (-22.82 = -23.94 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:23 2006