| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,886,206 – 11,886,298 |
| Length | 92 |
| Max. P | 0.887905 |
| Location | 11,886,206 – 11,886,298 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.95 |
| Mean single sequence MFE | -27.39 |
| Consensus MFE | -9.77 |
| Energy contribution | -10.62 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11886206 92 + 23771897 ACCA-------CGGGCACUGUUUUUC--CCCG-----GAAACGGAAACCUGCAUGCAAAGAUCAACAGGAAAAAGAGC----GGCAAAGUGGCGGCUCGGGAGCCCCAAA ....-------.((((.((.((((((--((((-----....))).....((....))..........)))))))((((----.((......)).)))).)).)))).... ( -31.80) >DroSec_CAF1 61803 96 + 1 ACCA-------CGUGCACUGUUUUUC--CCCG-----GAAACGGAAACCUGCAUGCAAAGAUCAACAGGAAAAAAAGCAAAAGGCAAAAUGGCGGCUCGAGCGCCCCAAA .((.-------..(((....((((((--((((-----....))).....((....))..........)))))))..)))...)).....(((.(((......)))))).. ( -25.60) >DroEre_CAF1 63352 89 + 1 ACCA-------CGGGCGCUGUUUCUA---CCG-----GAAACGGAAACCUGCAUGCAAAGAUCAACAGGAAAAAG------GGGCAAAAUGGCGGCCCGUGUGCCCCGAA ..((-------((((((((((..((.---(((-----....)))...((((..............))))....))------..)).....))).)))))))......... ( -31.64) >DroYak_CAF1 64160 88 + 1 ACCA-------CGAGCGCUGUUUUU----CCG-----GAAACGGAAACCUGCAUGCAAAGAUCAACAGGAAAAAG------GGGCAAAAUGGCGGCCUGGGAGCCCCAAA ....-------...(((.(((.(((----(((-----....))))))...))))))..................(------((((.....((...)).....)))))... ( -26.20) >DroAna_CAF1 58078 102 + 1 CCCAGCUCCCUCCG--GCUAUUUUCACUCUCGGAAUUGAAAGGGAAACCGGCAUGCAAAGAUCAACAAGAAU---AGCGAA---AAAAUCGGAUUCCCCGGCAGCCCAUA ....(((.((....--((((((((...(((..(...((...((....))..))..)..)))......)))))---)))...---......((.....)))).)))..... ( -21.70) >consensus ACCA_______CGGGCGCUGUUUUUA__CCCG_____GAAACGGAAACCUGCAUGCAAAGAUCAACAGGAAAAAGAGC____GGCAAAAUGGCGGCCCGGGAGCCCCAAA ..............((.(((((((.............)))))))...((((..............))))..............))....(((.(((......)))))).. ( -9.77 = -10.62 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:01 2006