Locus 4071

Sequence ID 3L_DroMel_CAF1
Location 11,858,728 – 11,858,823
Length 95
Max. P 0.676714
window6338

overview

Window 8

Location 11,858,728 – 11,858,823
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 83.80
Mean single sequence MFE -24.25
Consensus MFE -17.74
Energy contribution -18.77
Covariance contribution 1.03
Combinations/Pair 1.05
Mean z-score -2.14
Structure conservation index 0.73
SVM decision value 0.30
SVM RNA-class probability 0.676714
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11858728 95 - 23771897
CGUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACACACACAACACGGCACUCCCCUGGCCCCUUUGGCACCCACAGCUCGUCCU---
((...(((((((....((((...(((((..((.....))..))).)).........(((.(......)))).....)))).))))))).))....--- ( -25.70)
>DroSec_CAF1 34620 93 - 1
CGUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGCACUCCCCUGGCCCCUUUGGCAACCACAGCUCGUCCU---
((...((((((((...((((...(((((..((.....))..))).)--).......(((.(......)))).....)))))))))))).))....--- ( -27.70)
>DroSim_CAF1 35086 93 - 1
CGUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGCACUCCCCUGGCCCCUUUGGCACCCACAGCUCGUCCU---
((...(((((((....((((...(((((..((.....))..))).)--).......(((.(......)))).....)))).))))))).))....--- ( -25.70)
>DroEre_CAF1 37099 95 - 1
-GUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGCUCUCCCCUGGCCCCUUUGGCAGCCACAGCUCCCCCUGCU
-....((((((((...((((...(((((..((.....))..))).)--).......((((.......)))).....)))))))))))).......... ( -27.60)
>DroYak_CAF1 35838 85 - 1
-GUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGC----------CCCCUUUGGCACCCACAGCUCGUCCUGCU
-....(((((((...........(((((..((.....))..))).)--)........((----------(......)))..))))))).......... ( -23.10)
>DroAna_CAF1 34531 77 - 1
-GUCUGCUGUGGUUUAUGUCCUCCUUGUUGACAUUUAGUUGACACA--CACCACACACA---C------------CAACACACACAGAUCCUUCU---
-(((((.(((((((..(((......(((..((.....))..)))..--........)))---.------------.))).)))))))))......--- ( -15.69)
>consensus
_GUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA__CACAACACGGCACUCCCCUGGCCCCUUUGGCACCCACAGCUCGUCCU___
.....(((((((....((((.....(((..((.....))..)))............(((.........))).....)))).))))))).......... (-17.74 = -18.77 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:48 2006