| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,834,417 – 11,834,520 |
| Length | 103 |
| Max. P | 0.500000 |
| Location | 11,834,417 – 11,834,520 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 81.01 |
| Mean single sequence MFE | -28.69 |
| Consensus MFE | -15.71 |
| Energy contribution | -17.93 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11834417 103 - 23771897 UGUCCUUCGAAGGCAUUAUUCACUGGG----AAACGCUGUCAUCUUUGGUCGCUGGCGCCAUUUGUUCACAUUUGAAUAAUAAAUUAAAUGUUGCAAAUGUCGCUCU ..((((..(((.......)))...)))----)...((..(((....)))..)).((((.(((((((..((((((((........)))))))).))))))).)))).. ( -25.70) >DroPse_CAF1 11371 102 - 1 UGUCCUUAGCGGCCAUUACUCACGGCU-----AGGACUGUCAUCUUUGGCCGCCGGCGCCAUUUGUUCACAUUUGAAUAAUAAAUUAAAUGAUGCAAAUUCCGGGCU .((((...(((((((......((((..-----....))))......))))))).((....((((((...(((((((........)))))))..)))))).)))))). ( -30.80) >DroWil_CAF1 54543 106 - 1 UGUCCUUUGCGGCCAUUAGUCACAGCGUUGAAUGCGCUGUCAUCUUUGGCCGUUGGCGCCAUUUAUUCACAUUUGAAUAAUAAAUUAAAUGUUGCAAAUGUCGUUU- ...((...(((((((..((..(((((((.....)))))))...)).))))))).))((.(((((....((((((((........))))))))...))))).))...- ( -33.70) >DroMoj_CAF1 29473 107 - 1 UGUCCUCGCUGGCCAUUAUUCACGCCGCGACGUUGGCUGUCAUCUAUGACCAUUCGGGCCAUUUGUUCACAUUUGCAUAAUAAAUUAAAUGUUGCAAGUGUCGUUCA .........(((((.........((((......)))).((((....))))......)))))..((..((((((((((...............))))))))).)..)) ( -25.56) >DroAna_CAF1 10503 102 - 1 UGUCCUUUGAAGCCAUUAGUCACUGC-----AAACGCUGUCAUCUUUGGCCGCUGGCGCCAUUUGUUCACAUUUGAAUAAUAAAUUAAAUGUUGCAACUGCCGGGCU .((((......((((...((....))-----....((.((((....)))).))))))(.((.((((..((((((((........)))))))).)))).)).))))). ( -25.10) >DroPer_CAF1 11378 102 - 1 UGUCCUUAGCGGCCAUUACUCACGGCU-----AGGACUGUCAUCUUUGGCCGCCGGCGCCAUUUGUUCACAUUUGAAUAAUAAAUUAAAUGAUGCAAAUUCCGGGCA .((((...(((((((......((((..-----....))))......))))))).((....((((((...(((((((........)))))))..)))))).)))))). ( -31.30) >consensus UGUCCUUAGCGGCCAUUACUCACGGCG____AAGCGCUGUCAUCUUUGGCCGCUGGCGCCAUUUGUUCACAUUUGAAUAAUAAAUUAAAUGUUGCAAAUGCCGGGCU ...((...(((((((......((((...........))))......))))))).))((.(((((((...(((((((........)))))))..))))))).)).... (-15.71 = -17.93 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:31 2006